#=GENOME_DIFF	1.0
#=CREATED	19:43:38 13 Jul 2021
#=PROGRAM	breseq 0.35.5 revision 9f368df52761
#=COMMAND	breseq -j8 -r ../genomes/GCA_000007565.2_ASM756v2_genomic.gbff -o ABF024-034.ANL/results/ABF026 2021-06-07/ABF026_SAMPLE8_L001_R2_001.fastq 2021-06-28/ABF026_S8_L001_R2_001.fastq 2021-06-07/ABF026_SAMPLE8_L001_R1_001.fastq 2021-06-28/ABF026_S8_L001_R1_001.fastq
#=REFSEQ	../genomes/GCA_000007565.2_ASM756v2_genomic.gbff
#=READSEQ	2021-06-07/ABF026_SAMPLE8_L001_R2_001.fastq
#=READSEQ	2021-06-28/ABF026_S8_L001_R2_001.fastq
#=READSEQ	2021-06-07/ABF026_SAMPLE8_L001_R1_001.fastq
#=READSEQ	2021-06-28/ABF026_S8_L001_R1_001.fastq
#=CONVERTED-BASES	848022350
#=CONVERTED-READS	2817350
#=INPUT-BASES	848100008
#=INPUT-READS	2817608
#=MAPPED-BASES	686812836
#=MAPPED-READS	2303661
SNP	1	64	AE015451	187648	A
INS	2	76	AE015451	278744	A
INS	3	77	AE015451	307866	C
INS	4	78	AE015451	336125	T
SNP	5	79	AE015451	353067	G
SNP	6	81	AE015451	499203	G
INS	7	84,85	AE015451	1070248	GA
INS	8	99	AE015451	1126647	C
SUB	9	168,181	AE015451	1164572	830	TCA
INS	10	101	AE015451	1419549	C
SUB	11	102,103	AE015451	1499480	2	AC
SUB	12	104,105	AE015451	1499498	1	CG
INS	13	106	AE015451	1499508	C
SUB	14	171,182	AE015451	1709370	2640	CGGCCGC
INS	15	107	AE015451	1932640	C
SUB	16	172,184	AE015451	2032505	1680	GCGGCCGC
DEL	17	109,110,111	AE015451	2837065	3
DEL	18	112	AE015451	2837068	1
DEL	19	113,114,115,116,117,118	AE015451	2837071	6
SNP	20	119	AE015451	2935792	A
SNP	21	120	AE015451	2958523	T
DEL	22	121	AE015451	3137784	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
INS	23	122	AE015451	3845705	G
SNP	24	123	AE015451	3951159	C
SNP	25	124	AE015451	3951161	T
SNP	26	125	AE015451	4025384	C
SUB	27	132,133	AE015451	4586030	2	TC
INS	28	134	AE015451	4586035	G
INS	29	135	AE015451	4586057	C
SNP	30	136	AE015451	4714831	A
DEL	31	137	AE015451	4740811	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	32	138	AE015451	4740816	G
SUB	33	139,140	AE015451	4740819	2	CT
INS	34	141	AE015451	4741228	C
SNP	35	142	AE015451	4741230	G
SNP	36	143	AE015451	4741232	T
SNP	37	144	AE015451	4741235	T
SNP	38	145	AE015451	4741238	G
SUB	39	146,147	AE015451	4741240	2	CT
DEL	40	148	AE015451	4741246	1
INS	41	149	AE015451	4741254	T
SNP	42	150	AE015451	4741258	G
DEL	43	151	AE015451	4741262	1
SNP	44	152	AE015451	4741263	C
SNP	45	153	AE015451	4741272	G
SNP	46	154	AE015451	4741274	C
SNP	47	155	AE015451	4741276	C
SNP	48	156	AE015451	4741278	T
INS	49	157	AE015451	4741283	T
SNP	50	158	AE015451	4741289	G
SNP	51	159	AE015451	4741292	T
SNP	52	160	AE015451	4741294	G
SNP	53	161	AE015451	4741296	C
SNP	54	162	AE015451	4741298	T
SNP	55	163	AE015451	4889556	A
SUB	56	175,190	AE015451	4892114	1412	GCGGCCGC
INS	57	193	AE015451	4980585	GGC
SUB	58	177,195	AE015451	5342745	1681	GCGGCCGC
INS	59	199	AE015451	5555608	GCC
INS	60	164	AE015451	5674751	G
SNP	61	165	AE015451	5674753	C
INS	62	200	AE015451	5681415	CGGG
SNP	63	166	AE015451	6013885	C
RA	64	.	AE015451	187648	0	T	A	consensus_score=601.8	frequency=1	major_base=A	major_cov=83/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/82
RA	65	.	AE015451	195559	0	C	A	bias_e_value=6181870	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.7	fisher_strand_p_value=1	frequency=3.529e-01	ks_quality_p_value=0.999287	major_base=C	major_cov=55/55	major_frequency=6.471e-01	minor_base=A	minor_cov=30/30	new_cov=30/30	polymorphism_frequency=3.529e-01	polymorphism_score=158.3	prediction=polymorphism	ref_cov=55/55	total_cov=88/86
RA	66	.	AE015451	195634	0	C	T	bias_e_value=5641430	bias_p_value=0.912576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.8	fisher_strand_p_value=0.764204	frequency=3.737e-01	ks_quality_p_value=0.801021	major_base=C	major_cov=55/64	major_frequency=6.263e-01	minor_base=T	minor_cov=35/36	new_cov=35/36	polymorphism_frequency=3.737e-01	polymorphism_score=193.1	prediction=polymorphism	ref_cov=55/64	total_cov=92/101
RA	67	.	AE015451	196372	0	A	G	bias_e_value=5037220	bias_p_value=0.814837	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.2	fisher_strand_p_value=0.456965	frequency=2.786e-01	ks_quality_p_value=1	major_base=A	major_cov=54/47	major_frequency=7.214e-01	minor_base=G	minor_cov=18/21	new_cov=18/21	polymorphism_frequency=2.786e-01	polymorphism_score=90.1	prediction=polymorphism	ref_cov=54/47	total_cov=73/68
RA	68	.	AE015451	196432	0	T	C	bias_e_value=5761260	bias_p_value=0.93196	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.4	fisher_strand_p_value=0.861076	frequency=2.744e-01	ks_quality_p_value=0.760171	major_base=T	major_cov=64/55	major_frequency=7.256e-01	minor_base=C	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=2.744e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=64/55	total_cov=88/77
RA	69	.	AE015451	196438	0	T	C	bias_e_value=4582580	bias_p_value=0.741293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=0.87647	frequency=4.634e-01	ks_quality_p_value=0.42609	major_base=T	major_cov=45/43	major_frequency=5.366e-01	minor_base=C	minor_cov=40/36	new_cov=40/36	polymorphism_frequency=4.634e-01	polymorphism_score=229.0	prediction=polymorphism	ref_cov=45/43	total_cov=90/80
RA	70	.	AE015451	196459	0	C	A	bias_e_value=5197030	bias_p_value=0.840689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.7	fisher_strand_p_value=1	frequency=4.762e-01	ks_quality_p_value=0.491612	major_base=C	major_cov=47/41	major_frequency=5.238e-01	minor_base=A	minor_cov=42/38	new_cov=42/38	polymorphism_frequency=4.762e-01	polymorphism_score=244.6	prediction=polymorphism	ref_cov=47/41	total_cov=91/80
RA	71	.	AE015451	196489	0	T	C	bias_e_value=4599030	bias_p_value=0.743954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.7	fisher_strand_p_value=0.723574	frequency=2.485e-01	ks_quality_p_value=0.519874	major_base=T	major_cov=68/59	major_frequency=7.515e-01	minor_base=C	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=2.485e-01	polymorphism_score=110.8	prediction=polymorphism	ref_cov=68/59	total_cov=94/78
RA	72	.	AE015451	196495	0	G	C	bias_e_value=6176480	bias_p_value=0.999127	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.0	fisher_strand_p_value=1	frequency=5.233e-01	ks_quality_p_value=0.958508	major_base=C	major_cov=49/41	major_frequency=5.233e-01	minor_base=G	minor_cov=45/37	new_cov=49/41	polymorphism_frequency=5.233e-01	polymorphism_score=291.3	prediction=polymorphism	ref_cov=45/37	total_cov=94/78
RA	73	.	AE015451	196579	0	G	A	bias_e_value=4657220	bias_p_value=0.753368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.8	fisher_strand_p_value=0.63042	frequency=4.522e-01	ks_quality_p_value=0.612169	major_base=G	major_cov=43/43	major_frequency=5.478e-01	minor_base=A	minor_cov=39/32	new_cov=39/32	polymorphism_frequency=4.522e-01	polymorphism_score=203.7	prediction=polymorphism	ref_cov=43/43	total_cov=87/78
RA	74	.	AE015451	196879	0	G	A	bias_e_value=2766240	bias_p_value=0.447477	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.5	fisher_strand_p_value=0.16756	frequency=2.990e-01	ks_quality_p_value=0.936298	major_base=G	major_cov=70/73	major_frequency=7.010e-01	minor_base=A	minor_cov=23/38	new_cov=23/38	polymorphism_frequency=2.990e-01	polymorphism_score=150.2	prediction=polymorphism	ref_cov=70/73	total_cov=94/114
RA	75	.	AE015451	197632	0	T	C	bias_e_value=4128500	bias_p_value=0.66784	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.2	fisher_strand_p_value=0.439805	frequency=2.946e-01	ks_quality_p_value=0.694773	major_base=T	major_cov=51/40	major_frequency=7.054e-01	minor_base=C	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=2.946e-01	polymorphism_score=95.9	prediction=polymorphism	ref_cov=51/40	total_cov=71/60
RA	76	.	AE015451	278742	1	.	A	consensus_score=343.0	frequency=1	major_base=A	major_cov=48/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/48
RA	77	.	AE015451	307865	1	.	C	consensus_score=544.8	frequency=1	major_base=C	major_cov=73/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/70
RA	78	.	AE015451	336124	1	.	T	consensus_score=363.3	frequency=1	major_base=T	major_cov=47/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/54
RA	79	.	AE015451	353067	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=239.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=30/36	major_frequency=9.851e-01	minor_base=C	minor_cov=0/1	new_cov=30/36	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/37
RA	80	.	AE015451	441326	0	G	.	bias_e_value=6157560	bias_p_value=0.996067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.7	fisher_strand_p_value=1	frequency=2.299e-01	ks_quality_p_value=0.912632	major_base=G	major_cov=35/32	major_frequency=7.701e-01	minor_base=.	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=2.299e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=35/32	total_cov=45/42
RA	81	.	AE015451	499203	0	A	G	bias_e_value=6181870	bias_p_value=0.999999	consensus_score=254.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998436	major_base=G	major_cov=35/36	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=35/36	polymorphism_frequency=9.861e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=35/38
RA	82	.	AE015451	699420	0	T	G	bias_e_value=6148270	bias_p_value=0.994564	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.8	fisher_strand_p_value=1	frequency=2.327e-01	ks_quality_p_value=0.897555	major_base=T	major_cov=79/76	major_frequency=7.673e-01	minor_base=G	minor_cov=24/23	new_cov=24/23	polymorphism_frequency=2.327e-01	polymorphism_score=148.0	prediction=polymorphism	ref_cov=79/76	total_cov=103/99
RA	83	.	AE015451	699722	0	A	G	bias_e_value=4720360	bias_p_value=0.763581	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=0.427821	frequency=5.890e-01	ks_quality_p_value=0.927515	major_base=G	major_cov=74/65	major_frequency=5.890e-01	minor_base=A	minor_cov=46/51	new_cov=74/65	polymorphism_frequency=5.890e-01	polymorphism_score=286.4	prediction=polymorphism	ref_cov=46/51	total_cov=122/116
RA	84	.	AE015451	1070246	1	.	G	bias_e_value=1237870	bias_p_value=0.200242	consensus_score=167.8	fisher_strand_p_value=0.050152	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=25/20	major_frequency=9.184e-01	minor_base=.	minor_cov=0/4	new_cov=25/20	polymorphism_frequency=9.184e-01	polymorphism_score=4.6	prediction=consensus	ref_cov=0/4	total_cov=26/24
RA	85	.	AE015451	1070246	2	.	A	bias_e_value=1162620	bias_p_value=0.18807	consensus_score=157.1	fisher_strand_p_value=0.0461398	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/20	major_frequency=9.200e-01	minor_base=.	minor_cov=0/4	new_cov=26/20	polymorphism_frequency=9.200e-01	polymorphism_score=3.8	prediction=consensus	ref_cov=0/4	total_cov=26/24
RA	86	.	AE015451	1124554	1	.	T	bias_e_value=424.023	bias_p_value=6.85913e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.4	fisher_strand_p_value=8.13258e-06	frequency=5.106e-01	ks_quality_p_value=0.640653	major_base=T	major_cov=24/0	major_frequency=5.106e-01	minor_base=.	minor_cov=10/13	new_cov=24/0	polymorphism_frequency=5.106e-01	polymorphism_score=84.9	prediction=polymorphism	ref_cov=10/13	total_cov=34/13
RA	87	.	AE015451	1124564	0	G	T	bias_e_value=12791.2	bias_p_value=0.00206915	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.000229431	frequency=4.615e-01	ks_quality_p_value=0.956996	major_base=G	major_cov=10/11	major_frequency=5.385e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=4.615e-01	polymorphism_score=28.3	prediction=polymorphism	ref_cov=10/11	total_cov=30/11
RA	88	.	AE015451	1124565	0	C	G	bias_e_value=34682.6	bias_p_value=0.00561037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.4	fisher_strand_p_value=0.0007837	frequency=4.250e-01	ks_quality_p_value=0.862581	major_base=C	major_cov=12/11	major_frequency=5.750e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=4.250e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=12/11	total_cov=30/11
RA	89	.	AE015451	1124567	0	G	.	bias_e_value=3194.78	bias_p_value=0.000516797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.000229431	frequency=4.615e-01	ks_quality_p_value=0.205478	major_base=G	major_cov=10/11	major_frequency=5.385e-01	minor_base=.	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=4.615e-01	polymorphism_score=68.0	prediction=polymorphism	ref_cov=10/11	total_cov=30/11
RA	90	.	AE015451	1124568	0	G	T	bias_e_value=10129.2	bias_p_value=0.00163854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.000247198	frequency=4.634e-01	ks_quality_p_value=0.684438	major_base=G	major_cov=11/11	major_frequency=5.366e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=4.634e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=11/11	total_cov=30/11
RA	91	.	AE015451	1124571	0	T	A	bias_e_value=727850	bias_p_value=0.117739	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.6	fisher_strand_p_value=0.0284843	frequency=3.902e-01	ks_quality_p_value=0.882605	major_base=T	major_cov=15/10	major_frequency=6.098e-01	minor_base=A	minor_cov=15/1	new_cov=15/1	polymorphism_frequency=3.902e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=15/10	total_cov=30/11
RA	92	.	AE015451	1124573	0	G	A	bias_e_value=10129.2	bias_p_value=0.00163854	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.2	fisher_strand_p_value=0.000247198	frequency=4.634e-01	ks_quality_p_value=0.684438	major_base=G	major_cov=11/11	major_frequency=5.366e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=4.634e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=11/11	total_cov=30/11
RA	93	.	AE015451	1124574	0	C	A	bias_e_value=10129.2	bias_p_value=0.00163854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.000247198	frequency=4.634e-01	ks_quality_p_value=0.684438	major_base=C	major_cov=11/11	major_frequency=5.366e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=4.634e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=11/11	total_cov=30/11
RA	94	.	AE015451	1124575	0	C	A	bias_e_value=38289.2	bias_p_value=0.00619378	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.000756564	frequency=4.390e-01	ks_quality_p_value=1	major_base=C	major_cov=12/11	major_frequency=5.610e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=4.390e-01	polymorphism_score=32.5	prediction=polymorphism	ref_cov=12/11	total_cov=30/11
RA	95	.	AE015451	1124576	0	C	A	bias_e_value=36581.1	bias_p_value=0.00591748	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.000756564	frequency=4.390e-01	ks_quality_p_value=0.949365	major_base=C	major_cov=12/11	major_frequency=5.610e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=4.390e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=12/11	total_cov=30/11
RA	96	.	AE015451	1124577	0	G	A	bias_e_value=9893.02	bias_p_value=0.00160033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.8	fisher_strand_p_value=0.000164799	frequency=4.878e-01	ks_quality_p_value=1	major_base=G	major_cov=10/11	major_frequency=5.122e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=4.878e-01	polymorphism_score=36.5	prediction=polymorphism	ref_cov=10/11	total_cov=30/11
RA	97	.	AE015451	1124579	0	G	A	bias_e_value=3205.89	bias_p_value=0.000518595	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=6.98687e-05	frequency=4.762e-01	ks_quality_p_value=0.677321	major_base=G	major_cov=10/12	major_frequency=5.238e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=4.762e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=10/12	total_cov=30/12
RA	98	.	AE015451	1124580	0	C	A	bias_e_value=126087	bias_p_value=0.0203962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.00299462	frequency=3.571e-01	ks_quality_p_value=1	major_base=C	major_cov=15/12	major_frequency=6.429e-01	minor_base=A	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=3.571e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=15/12	total_cov=30/12
RA	99	.	AE015451	1126645	1	.	C	bias_e_value=4913470	bias_p_value=0.794819	consensus_score=274.9	fisher_strand_p_value=0.432432	frequency=1	ks_quality_p_value=0.99963	major_base=C	major_cov=42/31	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=42/31	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/32
RA	100	.	AE015451	1327121	0	C	T	bias_e_value=1968070	bias_p_value=0.318361	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.5	fisher_strand_p_value=0.249826	frequency=4.171e-01	ks_quality_p_value=0.379827	major_base=C	major_cov=51/65	major_frequency=5.829e-01	minor_base=T	minor_cov=44/39	new_cov=44/39	polymorphism_frequency=4.171e-01	polymorphism_score=244.9	prediction=polymorphism	ref_cov=51/65	total_cov=95/104
RA	101	.	AE015451	1419548	1	.	C	bias_e_value=6180730	bias_p_value=0.999815	consensus_score=110.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980831	major_base=C	major_cov=13/17	major_frequency=9.677e-01	minor_base=.	minor_cov=0/1	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/1	total_cov=13/18
RA	102	.	AE015451	1499480	0	C	A	bias_e_value=5203770	bias_p_value=0.841779	consensus_score=257.3	fisher_strand_p_value=0.493151	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/37	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=35/37	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/37
RA	103	.	AE015451	1499481	0	A	C	consensus_score=260.7	frequency=1	major_base=C	major_cov=36/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/37
RA	104	.	AE015451	1499497	1	.	C	bias_e_value=4381520	bias_p_value=0.708769	consensus_score=245.3	fisher_strand_p_value=0.486111	frequency=1	ks_quality_p_value=0.703201	major_base=C	major_cov=37/34	major_frequency=9.861e-01	minor_base=A	minor_cov=0/1	new_cov=37/34	polymorphism_frequency=9.861e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	105	.	AE015451	1499498	0	T	G	consensus_score=258.4	frequency=1	major_base=G	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	106	.	AE015451	1499506	1	.	C	bias_e_value=5202920	bias_p_value=0.841641	consensus_score=248.5	fisher_strand_p_value=0.494523	frequency=1	ks_quality_p_value=0.99683	major_base=C	major_cov=36/34	major_frequency=9.722e-01	minor_base=.	minor_cov=2/0	new_cov=36/34	polymorphism_frequency=9.722e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=2/0	total_cov=38/34
RA	107	.	AE015451	1932638	1	.	C	consensus_score=138.8	frequency=1	major_base=C	major_cov=21/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/18
RA	108	.	AE015451	2550125	0	G	A	bias_e_value=6181870	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=1	frequency=6.667e-01	ks_quality_p_value=1	major_base=A	major_cov=37/41	major_frequency=6.667e-01	minor_base=G	minor_cov=19/20	new_cov=37/41	polymorphism_frequency=6.667e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=19/20	total_cov=56/62
RA	109	.	AE015451	2837064	0	G	.	consensus_score=12.9	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	110	.	AE015451	2837065	0	T	.	consensus_score=12.9	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	111	.	AE015451	2837066	0	G	.	consensus_score=12.9	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	112	.	AE015451	2837068	0	C	.	consensus_score=14.0	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	113	.	AE015451	2837071	0	G	.	consensus_score=14.8	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	114	.	AE015451	2837072	0	G	.	consensus_score=14.8	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	115	.	AE015451	2837073	0	T	.	consensus_score=14.8	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	116	.	AE015451	2837074	0	G	.	consensus_score=14.8	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	117	.	AE015451	2837075	0	G	.	consensus_score=14.8	frequency=1	major_base=.	major_cov=1/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/4
RA	118	.	AE015451	2837076	0	C	.	bias_e_value=6181870	bias_p_value=1	consensus_score=10.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=1/3	major_frequency=8.000e-01	minor_base=C	minor_cov=0/1	new_cov=1/3	polymorphism_frequency=8.000e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/1	total_cov=1/4
RA	119	.	AE015451	2935792	0	G	A	consensus_score=334.9	frequency=1	major_base=A	major_cov=50/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/43
RA	120	.	AE015451	2958523	0	C	T	consensus_score=232.1	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	121	.	AE015451	3137776	0	T	.	bias_e_value=5851740	bias_p_value=0.946596	consensus_score=368.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.691519	major_base=.	major_cov=41/40	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=41/40	polymorphism_frequency=9.878e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/1	total_cov=41/41
RA	122	.	AE015451	3845703	1	.	G	bias_e_value=3225190	bias_p_value=0.521717	consensus_score=206.1	fisher_strand_p_value=0.199894	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/26	major_frequency=9.677e-01	minor_base=.	minor_cov=0/2	new_cov=34/26	polymorphism_frequency=9.677e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=0/2	total_cov=34/28
RA	123	.	AE015451	3951159	0	T	C	consensus_score=153.2	frequency=1	major_base=C	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	124	.	AE015451	3951161	0	A	T	consensus_score=157.7	frequency=1	major_base=T	major_cov=23/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/23
RA	125	.	AE015451	4025384	0	T	C	consensus_score=339.4	frequency=1	major_base=C	major_cov=50/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/40
RA	126	.	AE015451	4169472	0	T	C	bias_e_value=84132.3	bias_p_value=0.0136095	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.0	fisher_strand_p_value=0.00215579	frequency=2.857e-01	ks_quality_p_value=0.866878	major_base=T	major_cov=11/14	major_frequency=7.143e-01	minor_base=C	minor_cov=10/0	new_cov=10/0	polymorphism_frequency=2.857e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=11/14	total_cov=21/14
RA	127	.	AE015451	4169474	1	.	A	bias_e_value=181847	bias_p_value=0.0294162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.8	fisher_strand_p_value=0.00508438	frequency=2.571e-01	ks_quality_p_value=0.906939	major_base=.	major_cov=12/14	major_frequency=7.429e-01	minor_base=A	minor_cov=9/0	new_cov=9/0	polymorphism_frequency=2.571e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=12/14	total_cov=21/14
RA	128	.	AE015451	4169481	0	A	.	bias_e_value=27400.1	bias_p_value=0.00443233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.5	fisher_strand_p_value=0.0148221	frequency=2.162e-01	ks_quality_p_value=0.0349066	major_base=A	major_cov=15/14	major_frequency=7.838e-01	minor_base=.	minor_cov=8/0	new_cov=8/0	polymorphism_frequency=2.162e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=15/14	total_cov=23/14
RA	129	.	AE015451	4169493	0	T	A	bias_e_value=876529	bias_p_value=0.14179	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.4	fisher_strand_p_value=0.0318971	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=7.778e-01	minor_base=A	minor_cov=8/0	new_cov=8/0	polymorphism_frequency=2.222e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=15/13	total_cov=23/13
RA	130	.	AE015451	4236779	0	T	G	consensus_score=58.8	deleted=1	frequency=1	major_base=G	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	131	.	AE015451	4348705	0	A	G	bias_e_value=5090750	bias_p_value=0.823496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.1	fisher_strand_p_value=0.881042	frequency=4.830e-01	ks_quality_p_value=0.531413	major_base=A	major_cov=44/47	major_frequency=5.170e-01	minor_base=G	minor_cov=40/45	new_cov=40/45	polymorphism_frequency=4.830e-01	polymorphism_score=270.8	prediction=polymorphism	ref_cov=44/47	total_cov=84/92
RA	132	.	AE015451	4586030	0	C	T	consensus_score=141.2	frequency=1	major_base=T	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	133	.	AE015451	4586031	0	T	C	consensus_score=147.7	frequency=1	major_base=C	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	134	.	AE015451	4586033	1	.	G	consensus_score=149.2	frequency=1	major_base=G	major_cov=17/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/23
RA	135	.	AE015451	4586056	1	.	C	consensus_score=135.2	frequency=1	major_base=C	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	136	.	AE015451	4714831	0	C	A	consensus_score=424.1	frequency=1	major_base=A	major_cov=60/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/58
RA	137	.	AE015451	4740805	0	T	.	bias_e_value=6181870	bias_p_value=1	consensus_score=296.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=32/31	major_frequency=9.844e-01	minor_base=G	minor_cov=0/1	new_cov=32/31	polymorphism_frequency=9.844e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=32/32
RA	138	.	AE015451	4740816	0	T	G	bias_e_value=5197910	bias_p_value=0.84083	consensus_score=230.2	fisher_strand_p_value=0.492063	frequency=1	ks_quality_p_value=0.999488	major_base=G	major_cov=30/32	major_frequency=9.841e-01	minor_base=C	minor_cov=1/0	new_cov=30/32	polymorphism_frequency=9.841e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	139	.	AE015451	4740819	0	T	C	consensus_score=236.9	frequency=1	major_base=C	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	140	.	AE015451	4740820	0	G	T	consensus_score=225.8	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	141	.	AE015451	4741228	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=255.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=35/32	major_frequency=9.710e-01	minor_base=.	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	142	.	AE015451	4741230	0	A	G	bias_e_value=6181690	bias_p_value=0.99997	consensus_score=243.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992243	major_base=G	major_cov=35/32	major_frequency=9.710e-01	minor_base=A	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	143	.	AE015451	4741232	0	C	T	bias_e_value=6160030	bias_p_value=0.996466	consensus_score=232.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917114	major_base=T	major_cov=35/32	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	144	.	AE015451	4741235	0	C	T	bias_e_value=6181690	bias_p_value=0.99997	consensus_score=236.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992243	major_base=T	major_cov=35/32	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	145	.	AE015451	4741238	0	C	G	bias_e_value=6181290	bias_p_value=0.999905	consensus_score=256.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986252	major_base=G	major_cov=35/32	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-0.7	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	146	.	AE015451	4741240	0	A	C	bias_e_value=6181870	bias_p_value=1	consensus_score=256.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999135	major_base=C	major_cov=35/32	major_frequency=9.710e-01	minor_base=A	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	147	.	AE015451	4741241	0	C	T	bias_e_value=6180450	bias_p_value=0.999769	consensus_score=235.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978601	major_base=T	major_cov=35/32	major_frequency=9.710e-01	minor_base=C	minor_cov=1/1	new_cov=35/32	polymorphism_frequency=9.710e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=1/1	total_cov=36/33
RA	148	.	AE015451	4741245	0	A	.	bias_e_value=5145190	bias_p_value=0.832303	consensus_score=313.3	fisher_strand_p_value=0.485294	frequency=1	ks_quality_p_value=0.989085	major_base=.	major_cov=35/32	major_frequency=9.853e-01	minor_base=C	minor_cov=0/1	new_cov=35/32	polymorphism_frequency=9.853e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	149	.	AE015451	4741254	1	.	T	consensus_score=250.4	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	150	.	AE015451	4741258	0	A	G	consensus_score=263.8	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	151	.	AE015451	4741261	0	A	.	consensus_score=332.6	frequency=1	major_base=.	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	152	.	AE015451	4741263	0	A	C	consensus_score=264.1	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	153	.	AE015451	4741272	0	A	G	consensus_score=261.1	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	154	.	AE015451	4741274	0	A	C	consensus_score=259.7	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	155	.	AE015451	4741276	0	G	C	consensus_score=261.2	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	156	.	AE015451	4741278	0	C	T	consensus_score=249.6	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	157	.	AE015451	4741283	1	.	T	consensus_score=249.9	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	158	.	AE015451	4741289	0	C	G	consensus_score=255.6	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	159	.	AE015451	4741292	0	C	T	consensus_score=248.0	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	160	.	AE015451	4741294	0	C	G	consensus_score=259.1	frequency=1	major_base=G	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	161	.	AE015451	4741296	0	A	C	consensus_score=261.3	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	162	.	AE015451	4741298	0	C	T	consensus_score=249.8	frequency=1	major_base=T	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	163	.	AE015451	4889556	0	G	A	consensus_score=263.5	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	164	.	AE015451	5674750	1	.	G	bias_e_value=6170450	bias_p_value=0.998152	consensus_score=358.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.939817	major_base=G	major_cov=49/47	major_frequency=9.897e-01	minor_base=T	minor_cov=1/0	new_cov=49/47	polymorphism_frequency=9.897e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/0	total_cov=51/47
RA	165	.	AE015451	5674753	0	G	C	bias_e_value=5165650	bias_p_value=0.835613	consensus_score=354.5	fisher_strand_p_value=0.484536	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/46	major_frequency=9.897e-01	minor_base=A	minor_cov=0/1	new_cov=50/46	polymorphism_frequency=9.897e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/47
RA	166	.	AE015451	6013885	0	T	C	consensus_score=246.5	frequency=1	major_base=C	major_cov=37/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/31
MC	167	.	AE015451	207679	216685	1318	1299	left_inside_cov=27	left_outside_cov=28	right_inside_cov=26	right_outside_cov=28
MC	168	.	AE015451	1164572	1165401	0	0	left_inside_cov=0	left_outside_cov=99	right_inside_cov=0	right_outside_cov=99
MC	169	.	AE015451	1551289	1552878	0	0	left_inside_cov=27	left_outside_cov=29	right_inside_cov=27	right_outside_cov=28
MC	170	.	AE015451	1644933	1647408	0	0	left_inside_cov=27	left_outside_cov=28	right_inside_cov=26	right_outside_cov=29
MC	171	.	AE015451	1709370	1712009	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=0	right_outside_cov=94
MC	172	.	AE015451	2032505	2034184	0	0	left_inside_cov=0	left_outside_cov=96	right_inside_cov=0	right_outside_cov=93
MC	173	.	AE015451	3276921	3278181	0	0	left_inside_cov=27	left_outside_cov=28	right_inside_cov=26	right_outside_cov=28
MC	174	.	AE015451	4236757	4239342	0	0	left_inside_cov=26	left_outside_cov=28	right_inside_cov=26	right_outside_cov=28
MC	175	.	AE015451	4892114	4893525	0	0	left_inside_cov=0	left_outside_cov=63	right_inside_cov=0	right_outside_cov=61
MC	176	.	AE015451	5280870	5282403	0	0	left_inside_cov=27	left_outside_cov=28	right_inside_cov=27	right_outside_cov=28
MC	177	.	AE015451	5342745	5344425	0	0	left_inside_cov=0	left_outside_cov=75	right_inside_cov=0	right_outside_cov=74
JC	178	.	AE015451	1	1	AE015451	6181873	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=89	coverage_plus=77	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=300	key=AE015451__1__1__AE015451__6181873__-1__0____301__301__0__0	max_left=297	max_left_minus=297	max_left_plus=296	max_min_left=146	max_min_left_minus=146	max_min_left_plus=143	max_min_right=147	max_min_right_minus=144	max_min_right_plus=147	max_pos_hash_score=600	max_right=300	max_right_minus=299	max_right_plus=300	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.50	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=144	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=166
JC	179	.	AE015451	610901	1	AE015451	812297	-1	0	alignment_overlap=18	coverage_minus=60	coverage_plus=50	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__610883__1__AE015451__812297__-1__18____301__301__1__0	max_left=269	max_left_minus=269	max_left_plus=263	max_min_left=139	max_min_left_minus=130	max_min_left_plus=139	max_min_right=140	max_min_right_minus=140	max_min_right_plus=135	max_pos_hash_score=564	max_right=275	max_right_minus=275	max_right_plus=266	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.07	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=100	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=18	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	180	.	AE015451	812296	1	AE015451	2436567	-1	0	alignment_overlap=7	coverage_minus=72	coverage_plus=69	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__812296__1__AE015451__2436574__-1__7____301__301__0__1	max_left=290	max_left_minus=290	max_left_plus=286	max_min_left=146	max_min_left_minus=136	max_min_left_plus=146	max_min_right=145	max_min_right_minus=145	max_min_right_plus=143	max_pos_hash_score=586	max_right=289	max_right_minus=283	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=152	polymorphism_frequency=1.000e+00	pos_hash_score=122	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=141
JC	181	.	AE015451	1164571	-1	AE015451	1165402	1	-3	alignment_overlap=-3	coverage_minus=46	coverage_plus=47	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__1164571__-1__AE015451__1165402__1__-3__TCA__301__301__0__0	max_left=297	max_left_minus=297	max_left_plus=287	max_min_left=140	max_min_left_minus=140	max_min_left_plus=140	max_min_right=145	max_min_right_minus=136	max_min_right_plus=145	max_pos_hash_score=594	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.90	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=TCA
JC	182	.	AE015451	1709369	-1	AE015451	1712010	1	-7	alignment_overlap=-7	coverage_minus=46	coverage_plus=45	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__1709369__-1__AE015451__1712010__1__-7__CGGCCGC__301__301__0__0	max_left=291	max_left_minus=291	max_left_plus=284	max_min_left=145	max_min_left_minus=140	max_min_left_plus=145	max_min_right=144	max_min_right_minus=133	max_min_right_plus=144	max_pos_hash_score=586	max_right=290	max_right_minus=290	max_right_plus=279	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.85	new_junction_read_count=92	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91	unique_read_sequence=CGGCCGC
JC	183	.	AE015451	1780066	-1	AE015451	1780129	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=5	flanking_left=301	flanking_right=301	frequency=1.954e-01	junction_possible_overlap_registers=293	key=AE015451__1780066__-1__AE015451__1780122__1__7____301__301__0__0	max_left=283	max_left_minus=230	max_left_plus=283	max_min_left=105	max_min_left_minus=105	max_min_left_plus=40	max_min_right=99	max_min_right_minus=91	max_min_right_plus=99	max_pos_hash_score=586	max_right=252	max_right_minus=252	max_right_plus=251	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.08	new_junction_read_count=9	polymorphism_frequency=1.954e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=9
JC	184	.	AE015451	2032504	-1	AE015451	2034185	1	-8	alignment_overlap=-8	coverage_minus=37	coverage_plus=50	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__2032504__-1__AE015451__2034185__1__-8__GCGGCCGC__301__301__0__0	max_left=291	max_left_minus=291	max_left_plus=290	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=134	max_min_right_minus=112	max_min_right_plus=134	max_pos_hash_score=584	max_right=292	max_right_minus=278	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.84	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87	unique_read_sequence=GCGGCCGC
JC	185	.	AE015451	2837080	1	AE015451	2837063	-1	0	alignment_overlap=92	coverage_minus=8	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=6.303e-01	junction_possible_overlap_registers=208	key=AE015451__2837080__1__AE015451__2837155__-1__92____301__301__0__0	max_left=183	max_left_minus=141	max_left_plus=183	max_min_left=100	max_min_left_minus=100	max_min_left_plus=70	max_min_right=43	max_min_right_minus=43	max_min_right_plus=18	max_pos_hash_score=416	max_right=197	max_right_minus=197	max_right_plus=182	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.17	new_junction_read_count=13	polymorphism_frequency=6.303e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.20	side_1_overlap=92	side_1_possible_overlap_registers=300	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=11
JC	186	.	AE015451	3826260	1	AE015451	3826846	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=14	flanking_left=301	flanking_right=301	frequency=NA	junction_possible_overlap_registers=298	key=AE015451__3826260__1__AE015451__3826848__-1__2____301__301__1__1	max_left=56	max_left_minus=38	max_left_plus=56	max_min_left=56	max_min_left_minus=38	max_min_left_plus=56	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=596	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=1.87	new_junction_read_count=206	polymorphism_frequency=NA	pos_hash_score=21	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	187	.	AE015451	4074284	-1	AE015451	4302323	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=9	flanking_left=301	flanking_right=301	frequency=1.622e-01	junction_possible_overlap_registers=298	key=AE015451__4074286__-1__AE015451__4302323__1__2____301__301__1__0	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=38	max_pos_hash_score=596	max_right=44	max_right_minus=44	max_right_plus=38	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.18	new_junction_read_count=20	polymorphism_frequency=1.622e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=2	side_2_possible_overlap_registers=300	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=20
JC	188	.	AE015451	4808174	1	AE015451	5988935	-1	0	alignment_overlap=35	coverage_minus=11	coverage_plus=8	flanking_left=301	flanking_right=301	frequency=4.071e-01	junction_possible_overlap_registers=265	key=AE015451__4808174__1__AE015451__5988970__-1__35____301__301__0__0	max_left=252	max_left_minus=252	max_left_plus=199	max_min_left=127	max_min_left_minus=110	max_min_left_plus=127	max_min_right=85	max_min_right_minus=85	max_min_right_plus=85	max_pos_hash_score=530	max_right=170	max_right_minus=157	max_right_plus=170	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.23	new_junction_read_count=23	polymorphism_frequency=4.071e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=35	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=19
JC	189	.	AE015451	4808179	-1	AE015451	5988765	1	0	alignment_overlap=12	coverage_minus=16	coverage_plus=22	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=288	key=AE015451__4808179__-1__AE015451__5988753__1__12____301__301__0__0	max_left=286	max_left_minus=286	max_left_plus=282	max_min_left=138	max_min_left_minus=138	max_min_left_plus=117	max_min_right=144	max_min_right_minus=139	max_min_right_plus=144	max_pos_hash_score=576	max_right=172	max_right_minus=141	max_right_plus=172	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.43	new_junction_read_count=46	polymorphism_frequency=9.403e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=12	side_1_possible_overlap_registers=300	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=38
JC	190	.	AE015451	4892113	-1	AE015451	4893526	1	-8	alignment_overlap=-8	coverage_minus=28	coverage_plus=31	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__4892113__-1__AE015451__4893526__1__-8__GCGGCCGC__301__301__0__0	max_left=281	max_left_minus=281	max_left_plus=271	max_min_left=134	max_min_left_minus=134	max_min_left_plus=94	max_min_right=143	max_min_right_minus=133	max_min_right_plus=143	max_pos_hash_score=584	max_right=285	max_right_minus=285	max_right_plus=282	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.56	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59	unique_read_sequence=GCGGCCGC
JC	191	.	AE015451	4896440	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=73	coverage_plus=60	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__4896440__1__AE015451__5756790__1__18____301__301__0__1	max_left=282	max_left_minus=282	max_left_plus=269	max_min_left=134	max_min_left_minus=133	max_min_left_plus=134	max_min_right=141	max_min_right_minus=139	max_min_right_plus=141	max_pos_hash_score=564	max_right=270	max_right_minus=270	max_right_plus=268	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.60	new_junction_read_count=167	polymorphism_frequency=1.000e+00	pos_hash_score=114	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=133
JC	192	.	AE015451	4896441	-1	AE015451	5220211	-1	0	alignment_overlap=7	coverage_minus=49	coverage_plus=53	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__4896441__-1__AE015451__5220218__-1__7____301__301__0__1	max_left=284	max_left_minus=283	max_left_plus=284	max_min_left=145	max_min_left_minus=141	max_min_left_plus=145	max_min_right=144	max_min_right_minus=144	max_min_right_plus=133	max_pos_hash_score=586	max_right=286	max_right_minus=286	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102
JC	193	.	AE015451	4980585	-1	AE015451	4980586	1	-3	alignment_overlap=-3	coverage_minus=43	coverage_plus=59	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__4980585__-1__AE015451__4980586__1__-3__GGC__301__301__0__0	max_left=294	max_left_minus=282	max_left_plus=294	max_min_left=143	max_min_left_minus=137	max_min_left_plus=143	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=594	max_right=293	max_right_minus=293	max_right_plus=293	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=105	polymorphism_frequency=9.907e-01	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=102	unique_read_sequence=GGC
JC	194	.	AE015451	5201567	-1	AE015451	5201666	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=8	flanking_left=301	flanking_right=301	frequency=2.351e-01	junction_possible_overlap_registers=297	key=AE015451__5201567__-1__AE015451__5201663__1__3____301__301__0__0	max_left=266	max_left_minus=0	max_left_plus=266	max_min_left=144	max_min_left_minus=0	max_min_left_plus=144	max_min_right=126	max_min_right_minus=0	max_min_right_plus=126	max_pos_hash_score=594	max_right=290	max_right_minus=0	max_right_plus=290	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.10	new_junction_read_count=11	polymorphism_frequency=2.351e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.40	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=8
JC	195	.	AE015451	5342744	-1	AE015451	5344426	1	-8	alignment_overlap=-8	coverage_minus=38	coverage_plus=35	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__5342744__-1__AE015451__5344426__1__-8__GCGGCCGC__301__301__0__0	max_left=289	max_left_minus=289	max_left_plus=286	max_min_left=145	max_min_left_minus=145	max_min_left_plus=141	max_min_right=136	max_min_right_minus=136	max_min_right_plus=124	max_pos_hash_score=584	max_right=288	max_right_minus=288	max_right_plus=264	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.68	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73	unique_read_sequence=GCGGCCGC
JC	196	.	AE015451	5513317	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=59	coverage_plus=53	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5513317__1__AE015451__5756790__1__18____301__301__0__1	max_left=281	max_left_minus=281	max_left_plus=277	max_min_left=136	max_min_left_minus=136	max_min_left_plus=119	max_min_right=141	max_min_right_minus=141	max_min_right_plus=133	max_pos_hash_score=564	max_right=265	max_right_minus=264	max_right_plus=265	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.10	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=102	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=112
JC	197	.	AE015451	5513318	-1	AE015451	5758121	-1	0	alignment_overlap=7	coverage_minus=53	coverage_plus=62	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5513318__-1__AE015451__5758128__-1__7____301__301__0__1	max_left=292	max_left_minus=292	max_left_plus=290	max_min_left=141	max_min_left_minus=136	max_min_left_plus=141	max_min_right=143	max_min_right_minus=135	max_min_right_plus=143	max_pos_hash_score=586	max_right=284	max_right_minus=284	max_right_plus=276	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.11	new_junction_read_count=120	polymorphism_frequency=1.000e+00	pos_hash_score=106	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=115
JC	198	.	AE015451	5545080	1	AE015451	5545666	-1	0	alignment_overlap=3	coverage_minus=9	coverage_plus=14	flanking_left=301	flanking_right=301	frequency=7.272e-01	junction_possible_overlap_registers=297	key=AE015451__5545080__1__AE015451__5545669__-1__3____301__301__0__1	max_left=294	max_left_minus=276	max_left_plus=294	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=54	max_pos_hash_score=594	max_right=58	max_right_minus=58	max_right_plus=54	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=3.12	new_junction_read_count=343	polymorphism_frequency=7.272e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=130	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	199	.	AE015451	5555608	-1	AE015451	5555609	1	-3	alignment_overlap=-3	coverage_minus=56	coverage_plus=50	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__5555608__-1__AE015451__5555609__1__-3__GCC__301__301__0__0	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=146	max_min_left_minus=144	max_min_left_plus=146	max_min_right=146	max_min_right_minus=141	max_min_right_plus=146	max_pos_hash_score=594	max_right=296	max_right_minus=296	max_right_plus=279	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.96	new_junction_read_count=106	polymorphism_frequency=9.907e-01	pos_hash_score=98	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=106	unique_read_sequence=GCC
JC	200	.	AE015451	5681415	-1	AE015451	5681416	1	-4	alignment_overlap=-4	coverage_minus=46	coverage_plus=51	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=296	key=AE015451__5681415__-1__AE015451__5681416__1__-4__CGGG__301__301__0__0	max_left=290	max_left_minus=286	max_left_plus=290	max_min_left=146	max_min_left_minus=146	max_min_left_plus=133	max_min_right=148	max_min_right_minus=143	max_min_right_plus=148	max_pos_hash_score=592	max_right=290	max_right_minus=288	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97	unique_read_sequence=CGGG
JC	201	.	AE015451	5696567	-1	AE015451	5696629	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=11	flanking_left=301	flanking_right=301	frequency=5.256e-01	junction_possible_overlap_registers=292	key=AE015451__5696567__-1__AE015451__5696621__1__8____301__301__0__0	max_left=279	max_left_minus=0	max_left_plus=279	max_min_left=129	max_min_left_minus=0	max_min_left_plus=129	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=584	max_right=277	max_right_minus=0	max_right_plus=277	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.12	new_junction_read_count=13	polymorphism_frequency=5.256e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.18	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=20	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=11
JC	202	.	AE015451	5984436	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=55	coverage_plus=57	flanking_left=301	flanking_right=301	frequency=5.586e-01	junction_possible_overlap_registers=282	key=AE015451__5984436__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=282	max_left_minus=276	max_left_plus=282	max_min_left=137	max_min_left_minus=97	max_min_left_plus=137	max_min_right=137	max_min_right_minus=132	max_min_right_plus=137	max_pos_hash_score=564	max_right=265	max_right_minus=265	max_right_plus=257	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=113	polymorphism_frequency=5.586e-01	pos_hash_score=96	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=112
JC	203	.	AE015451	5988787	1	AE015451	6037870	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=54	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5988787__1__AE015451__6037863__1__7____301__301__0__1	max_left=292	max_left_minus=287	max_left_plus=292	max_min_left=139	max_min_left_minus=139	max_min_left_plus=138	max_min_right=146	max_min_right_minus=137	max_min_right_plus=146	max_pos_hash_score=586	max_right=291	max_right_minus=291	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=108
JC	204	.	AE015451	5988788	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=52	coverage_plus=56	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5988788__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=272	max_left_minus=269	max_left_plus=272	max_min_left=140	max_min_left_minus=140	max_min_left_plus=138	max_min_right=136	max_min_right_minus=136	max_min_right_plus=129	max_pos_hash_score=564	max_right=280	max_right_minus=280	max_right_plus=276	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=98	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=108
UN	205	.	AE015451	171555	173196
UN	206	.	AE015451	173625	176104
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UN	255	.	AE015451	2548690	2549998
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UN	270	.	AE015451	2837169	2837169
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UN	280	.	AE015451	3808728	3808821
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UN	282	.	AE015451	3809412	3809423
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UN	330	.	AE015451	5757075	5757839
UN	331	.	AE015451	6038150	6038921
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