#=GENOME_DIFF	1.0
#=CREATED	19:44:00 13 Jul 2021
#=PROGRAM	breseq 0.35.5 revision 9f368df52761
#=COMMAND	breseq -j8 -r ../genomes/GCA_000007565.2_ASM756v2_genomic.gbff -o ABF024-034.ANL/results/ABF032 2021-06-07/ABF032_SAMPLE14_L001_R2_001.fastq 2021-06-28/ABF032_S14_L001_R2_001.fastq 2021-06-07/ABF032_SAMPLE14_L001_R1_001.fastq 2021-06-28/ABF032_S14_L001_R1_001.fastq
#=REFSEQ	../genomes/GCA_000007565.2_ASM756v2_genomic.gbff
#=READSEQ	2021-06-07/ABF032_SAMPLE14_L001_R2_001.fastq
#=READSEQ	2021-06-28/ABF032_S14_L001_R2_001.fastq
#=READSEQ	2021-06-07/ABF032_SAMPLE14_L001_R1_001.fastq
#=READSEQ	2021-06-28/ABF032_S14_L001_R1_001.fastq
#=CONVERTED-BASES	973669382
#=CONVERTED-READS	3234782
#=INPUT-BASES	973778946
#=INPUT-READS	3235146
#=MAPPED-BASES	654566967
#=MAPPED-READS	2207294
SNP	1	61	AE015451	187648	A
INS	2	73	AE015451	278744	A
INS	3	74	AE015451	307866	C
INS	4	75	AE015451	336125	T
SNP	5	76	AE015451	353067	G
SNP	6	77	AE015451	499203	G
INS	7	79,80	AE015451	1070248	GA
INS	8	93	AE015451	1126647	C
SUB	9	148,167	AE015451	1164572	830	TCA
INS	10	95	AE015451	1419549	C
SUB	11	96,97	AE015451	1499480	2	AC
SUB	12	98,99	AE015451	1499498	1	CG
INS	13	100	AE015451	1499508	C
SUB	14	151,173	AE015451	1709370	2640	CGGCCGC
INS	15	101	AE015451	1932640	C
SUB	16	152,176	AE015451	2032505	1680	GCGGCCGC
SNP	17	103	AE015451	2935792	A
SNP	18	104	AE015451	2958523	T
DEL	19	105	AE015451	3137784	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
INS	20	106	AE015451	3845705	G
SNP	21	107	AE015451	3951159	C
SNP	22	108	AE015451	3951161	T
SNP	23	109	AE015451	4025384	C
SUB	24	112,113	AE015451	4586030	2	TC
INS	25	114	AE015451	4586035	G
INS	26	115	AE015451	4586057	C
SNP	27	116	AE015451	4714831	A
DEL	28	117	AE015451	4740811	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	29	118	AE015451	4740816	G
SUB	30	119,120	AE015451	4740819	2	CT
INS	31	121	AE015451	4741228	C
SNP	32	122	AE015451	4741230	G
SNP	33	123	AE015451	4741232	T
SNP	34	124	AE015451	4741235	T
SNP	35	125	AE015451	4741238	G
SUB	36	126,127	AE015451	4741240	2	CT
DEL	37	128	AE015451	4741246	1
INS	38	129	AE015451	4741254	T
SNP	39	130	AE015451	4741258	G
DEL	40	131	AE015451	4741262	1
SNP	41	132	AE015451	4741263	C
SNP	42	133	AE015451	4741272	G
SNP	43	134	AE015451	4741274	C
SNP	44	135	AE015451	4741276	C
SNP	45	136	AE015451	4741278	T
INS	46	137	AE015451	4741283	T
SNP	47	138	AE015451	4741289	G
SNP	48	139	AE015451	4741292	T
SNP	49	140	AE015451	4741294	G
SNP	50	141	AE015451	4741296	C
SNP	51	142	AE015451	4741298	T
SNP	52	143	AE015451	4889556	A
SUB	53	155,194	AE015451	4892114	1412	GCGGCCGC
INS	54	199	AE015451	4980585	GGC
SUB	55	157,200	AE015451	5342745	1681	GCGGCCGC
INS	56	205	AE015451	5555608	GCC
INS	57	144	AE015451	5674751	G
SNP	58	145	AE015451	5674753	C
INS	59	207	AE015451	5681415	CGGG
SNP	60	146	AE015451	6013885	C
RA	61	.	AE015451	187648	0	T	A	bias_e_value=6181870	bias_p_value=1	consensus_score=406.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999379	major_base=A	major_cov=60/53	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=60/53	polymorphism_frequency=9.912e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=61/53
RA	62	.	AE015451	195505	0	C	G	bias_e_value=4746840	bias_p_value=0.767864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=370.3	fisher_strand_p_value=0.401474	frequency=2.164e-01	ks_quality_p_value=1	major_base=C	major_cov=47/58	major_frequency=7.836e-01	minor_base=G	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=2.164e-01	polymorphism_score=87.4	prediction=polymorphism	ref_cov=47/58	total_cov=63/72
RA	63	.	AE015451	195559	0	C	A	bias_e_value=6146590	bias_p_value=0.994293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.8	fisher_strand_p_value=1	frequency=3.832e-01	ks_quality_p_value=0.895083	major_base=C	major_cov=52/51	major_frequency=6.168e-01	minor_base=A	minor_cov=33/31	new_cov=33/31	polymorphism_frequency=3.832e-01	polymorphism_score=190.6	prediction=polymorphism	ref_cov=52/51	total_cov=85/83
RA	64	.	AE015451	195634	0	C	T	bias_e_value=5065920	bias_p_value=0.819479	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.1	fisher_strand_p_value=0.749663	frequency=2.995e-01	ks_quality_p_value=0.617535	major_base=C	major_cov=63/68	major_frequency=7.005e-01	minor_base=T	minor_cov=29/27	new_cov=29/27	polymorphism_frequency=2.995e-01	polymorphism_score=144.4	prediction=polymorphism	ref_cov=63/68	total_cov=92/96
RA	65	.	AE015451	196372	0	A	G	bias_e_value=5026930	bias_p_value=0.813173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.6	fisher_strand_p_value=0.454848	frequency=2.657e-01	ks_quality_p_value=1	major_base=A	major_cov=53/52	major_frequency=7.343e-01	minor_base=G	minor_cov=22/16	new_cov=22/16	polymorphism_frequency=2.657e-01	polymorphism_score=96.6	prediction=polymorphism	ref_cov=53/52	total_cov=78/69
RA	66	.	AE015451	196432	0	T	C	bias_e_value=5360560	bias_p_value=0.867141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.9	fisher_strand_p_value=0.544255	frequency=2.123e-01	ks_quality_p_value=0.975708	major_base=T	major_cov=54/61	major_frequency=7.877e-01	minor_base=C	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=2.123e-01	polymorphism_score=72.5	prediction=polymorphism	ref_cov=54/61	total_cov=72/75
RA	67	.	AE015451	196438	0	T	C	bias_e_value=4125600	bias_p_value=0.667371	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.5	fisher_strand_p_value=0.305169	frequency=3.986e-01	ks_quality_p_value=1	major_base=T	major_cov=38/48	major_frequency=6.014e-01	minor_base=C	minor_cov=31/26	new_cov=31/26	polymorphism_frequency=3.986e-01	polymorphism_score=158.5	prediction=polymorphism	ref_cov=38/48	total_cov=70/75
RA	68	.	AE015451	196459	0	C	A	bias_e_value=4100820	bias_p_value=0.663362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.5	fisher_strand_p_value=0.431912	frequency=4.596e-01	ks_quality_p_value=0.698771	major_base=C	major_cov=45/42	major_frequency=5.404e-01	minor_base=A	minor_cov=43/31	new_cov=43/31	polymorphism_frequency=4.596e-01	polymorphism_score=237.2	prediction=polymorphism	ref_cov=45/42	total_cov=88/74
RA	69	.	AE015451	196489	0	T	C	bias_e_value=117795	bias_p_value=0.0190549	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.7	fisher_strand_p_value=0.724252	frequency=2.062e-01	ks_quality_p_value=0.00381821	major_base=T	major_cov=83/71	major_frequency=7.938e-01	minor_base=C	minor_cov=23/17	new_cov=23/17	polymorphism_frequency=2.062e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=83/71	total_cov=106/89
RA	70	.	AE015451	196495	0	G	C	bias_e_value=4219500	bias_p_value=0.68256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.6	fisher_strand_p_value=0.318197	frequency=5.051e-01	ks_quality_p_value=1	major_base=C	major_cov=58/42	major_frequency=5.051e-01	minor_base=G	minor_cov=49/49	new_cov=58/42	polymorphism_frequency=5.051e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/49	total_cov=107/92
RA	71	.	AE015451	196579	0	G	A	bias_e_value=2033850	bias_p_value=0.329002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.3	fisher_strand_p_value=0.188163	frequency=3.495e-01	ks_quality_p_value=0.528557	major_base=G	major_cov=64/70	major_frequency=6.505e-01	minor_base=A	minor_cov=42/30	new_cov=42/30	polymorphism_frequency=3.495e-01	polymorphism_score=195.5	prediction=polymorphism	ref_cov=64/70	total_cov=108/101
RA	72	.	AE015451	196879	0	G	A	bias_e_value=4049640	bias_p_value=0.655083	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.0	fisher_strand_p_value=0.653648	frequency=2.586e-01	ks_quality_p_value=0.451255	major_base=G	major_cov=90/82	major_frequency=7.414e-01	minor_base=A	minor_cov=29/31	new_cov=29/31	polymorphism_frequency=2.586e-01	polymorphism_score=154.9	prediction=polymorphism	ref_cov=90/82	total_cov=120/118
RA	73	.	AE015451	278742	1	.	A	bias_e_value=6180910	bias_p_value=0.999844	consensus_score=308.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982377	major_base=A	major_cov=46/43	major_frequency=9.780e-01	minor_base=.	minor_cov=1/1	new_cov=46/43	polymorphism_frequency=9.780e-01	polymorphism_score=-2.7	prediction=consensus	ref_cov=1/1	total_cov=47/44
RA	74	.	AE015451	307865	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=493.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999888	major_base=C	major_cov=66/67	major_frequency=9.925e-01	minor_base=A	minor_cov=1/0	new_cov=66/67	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/67
RA	75	.	AE015451	336124	1	.	T	bias_e_value=6181870	bias_p_value=1	consensus_score=367.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=50/53	major_frequency=9.810e-01	minor_base=.	minor_cov=1/1	new_cov=50/53	polymorphism_frequency=9.810e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/1	total_cov=51/54
RA	76	.	AE015451	353067	0	A	G	consensus_score=262.3	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	77	.	AE015451	499203	0	A	G	consensus_score=329.4	frequency=1	major_base=G	major_cov=47/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/44
RA	78	.	AE015451	699722	0	A	G	bias_e_value=6134560	bias_p_value=0.992346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.887018	frequency=4.924e-01	ks_quality_p_value=0.990795	major_base=A	major_cov=52/48	major_frequency=5.076e-01	minor_base=G	minor_cov=49/48	new_cov=49/48	polymorphism_frequency=4.924e-01	polymorphism_score=315.1	prediction=polymorphism	ref_cov=52/48	total_cov=101/96
RA	79	.	AE015451	1070246	1	.	G	bias_e_value=5869260	bias_p_value=0.949431	consensus_score=261.9	fisher_strand_p_value=0.699324	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/32	major_frequency=9.091e-01	minor_base=.	minor_cov=3/4	new_cov=38/32	polymorphism_frequency=9.091e-01	polymorphism_score=11.9	prediction=consensus	ref_cov=3/4	total_cov=41/36
RA	80	.	AE015451	1070246	2	.	A	bias_e_value=5865240	bias_p_value=0.94878	consensus_score=242.8	fisher_strand_p_value=0.699324	frequency=1	ks_quality_p_value=0.997406	major_base=A	major_cov=38/32	major_frequency=9.091e-01	minor_base=.	minor_cov=3/4	new_cov=38/32	polymorphism_frequency=9.091e-01	polymorphism_score=12.5	prediction=consensus	ref_cov=3/4	total_cov=41/36
RA	81	.	AE015451	1124554	1	.	T	bias_e_value=7094.05	bias_p_value=0.00114756	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.4	fisher_strand_p_value=0.000149675	frequency=3.953e-01	ks_quality_p_value=0.760558	major_base=.	major_cov=12/14	major_frequency=6.047e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.953e-01	polymorphism_score=73.3	prediction=polymorphism	ref_cov=12/14	total_cov=29/14
RA	82	.	AE015451	1124564	0	G	T	bias_e_value=19187.5	bias_p_value=0.00310383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.5	fisher_strand_p_value=0.000355055	frequency=3.333e-01	ks_quality_p_value=0.974685	major_base=G	major_cov=11/15	major_frequency=6.667e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.333e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=11/15	total_cov=29/15
RA	83	.	AE015451	1124565	0	C	G	bias_e_value=51241.8	bias_p_value=0.00828904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.3	fisher_strand_p_value=0.00114949	frequency=3.095e-01	ks_quality_p_value=0.918158	major_base=C	major_cov=14/15	major_frequency=6.905e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.095e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=14/15	total_cov=28/15
RA	84	.	AE015451	1124567	0	G	.	bias_e_value=7456.82	bias_p_value=0.00120624	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.0	fisher_strand_p_value=0.000138511	frequency=3.590e-01	ks_quality_p_value=0.868658	major_base=G	major_cov=10/15	major_frequency=6.410e-01	minor_base=.	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.590e-01	polymorphism_score=48.0	prediction=polymorphism	ref_cov=10/15	total_cov=28/15
RA	85	.	AE015451	1124568	0	G	T	bias_e_value=29310.1	bias_p_value=0.0047413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=0.000571114	frequency=3.256e-01	ks_quality_p_value=0.977796	major_base=G	major_cov=14/15	major_frequency=6.744e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.256e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=14/15	total_cov=28/15
RA	86	.	AE015451	1124571	0	T	A	bias_e_value=485225	bias_p_value=0.0784916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.0	fisher_strand_p_value=0.0168898	frequency=2.093e-01	ks_quality_p_value=0.895111	major_base=T	major_cov=19/15	major_frequency=7.907e-01	minor_base=A	minor_cov=9/0	new_cov=9/0	polymorphism_frequency=2.093e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=19/15	total_cov=28/15
RA	87	.	AE015451	1124573	0	G	A	bias_e_value=7347.73	bias_p_value=0.00118859	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=0.00015117	frequency=3.488e-01	ks_quality_p_value=0.782995	major_base=G	major_cov=12/16	major_frequency=6.512e-01	minor_base=A	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=3.488e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=12/16	total_cov=28/16
RA	88	.	AE015451	1124574	0	C	A	bias_e_value=4564.8	bias_p_value=0.000738416	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.6	fisher_strand_p_value=7.75161e-05	frequency=3.636e-01	ks_quality_p_value=0.901319	major_base=C	major_cov=12/16	major_frequency=6.364e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=3.636e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=12/16	total_cov=28/16
RA	89	.	AE015451	1124575	0	C	A	bias_e_value=25622.5	bias_p_value=0.00414478	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.8	fisher_strand_p_value=0.000479575	frequency=3.182e-01	ks_quality_p_value=1	major_base=C	major_cov=14/16	major_frequency=6.818e-01	minor_base=A	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=3.182e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=14/16	total_cov=28/16
RA	90	.	AE015451	1124576	0	C	A	bias_e_value=261578	bias_p_value=0.0423137	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.3	fisher_strand_p_value=0.00711724	frequency=3.182e-01	ks_quality_p_value=1	major_base=C	major_cov=15/15	major_frequency=6.818e-01	minor_base=A	minor_cov=13/1	new_cov=13/1	polymorphism_frequency=3.182e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=15/15	total_cov=28/16
RA	91	.	AE015451	1124577	0	G	A	bias_e_value=8931.68	bias_p_value=0.00144482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.4	fisher_strand_p_value=0.00015117	frequency=3.721e-01	ks_quality_p_value=0.972814	major_base=G	major_cov=12/15	major_frequency=6.279e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=3.721e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=12/15	total_cov=28/16
RA	92	.	AE015451	1124579	0	G	A	bias_e_value=3356.16	bias_p_value=0.000542904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.0	fisher_strand_p_value=5.62088e-05	frequency=3.953e-01	ks_quality_p_value=0.885462	major_base=G	major_cov=11/15	major_frequency=6.047e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=3.953e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=11/15	total_cov=28/16
RA	93	.	AE015451	1126645	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=299.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=42/39	major_frequency=9.759e-01	minor_base=.	minor_cov=1/1	new_cov=42/39	polymorphism_frequency=9.759e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=43/40
RA	94	.	AE015451	1327121	0	C	T	bias_e_value=4018820	bias_p_value=0.650097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=0.535514	frequency=3.864e-01	ks_quality_p_value=0.543218	major_base=C	major_cov=52/56	major_frequency=6.136e-01	minor_base=T	minor_cov=29/39	new_cov=29/39	polymorphism_frequency=3.864e-01	polymorphism_score=195.4	prediction=polymorphism	ref_cov=52/56	total_cov=81/95
RA	95	.	AE015451	1419548	1	.	C	consensus_score=112.4	frequency=1	major_base=C	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	96	.	AE015451	1499480	0	C	A	bias_e_value=6181870	bias_p_value=1	consensus_score=238.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=34/34	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=34/34	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=35/34
RA	97	.	AE015451	1499481	0	A	C	consensus_score=254.9	frequency=1	major_base=C	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	98	.	AE015451	1499497	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=236.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/33	major_frequency=9.848e-01	minor_base=.	minor_cov=1/0	new_cov=32/33	polymorphism_frequency=9.848e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=33/33
RA	99	.	AE015451	1499498	0	T	G	bias_e_value=6181870	bias_p_value=1	consensus_score=242.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=32/33	major_frequency=9.848e-01	minor_base=T	minor_cov=1/0	new_cov=32/33	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/33
RA	100	.	AE015451	1499506	1	.	C	bias_e_value=6181840	bias_p_value=0.999994	consensus_score=243.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996545	major_base=C	major_cov=33/34	major_frequency=9.710e-01	minor_base=.	minor_cov=1/1	new_cov=33/34	polymorphism_frequency=9.710e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/1	total_cov=34/35
RA	101	.	AE015451	1932638	1	.	C	bias_e_value=4865180	bias_p_value=0.787008	consensus_score=189.2	fisher_strand_p_value=0.423077	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/21	major_frequency=9.808e-01	minor_base=A	minor_cov=0/1	new_cov=30/21	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/22
RA	102	.	AE015451	2550125	0	G	A	bias_e_value=5186030	bias_p_value=0.838909	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.5	fisher_strand_p_value=1	frequency=6.815e-01	ks_quality_p_value=0.489114	major_base=A	major_cov=44/48	major_frequency=6.815e-01	minor_base=G	minor_cov=21/22	new_cov=44/48	polymorphism_frequency=6.815e-01	polymorphism_score=121.9	prediction=polymorphism	ref_cov=21/22	total_cov=65/70
RA	103	.	AE015451	2935792	0	G	A	consensus_score=242.3	frequency=1	major_base=A	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	104	.	AE015451	2958523	0	C	T	consensus_score=256.8	frequency=1	major_base=T	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	105	.	AE015451	3137776	0	T	.	bias_e_value=6113600	bias_p_value=0.988957	consensus_score=413.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.855113	major_base=.	major_cov=45/45	major_frequency=9.783e-01	minor_base=T	minor_cov=1/1	new_cov=45/45	polymorphism_frequency=9.783e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=1/1	total_cov=46/46
RA	106	.	AE015451	3845703	1	.	G	bias_e_value=5561820	bias_p_value=0.899698	consensus_score=210.4	fisher_strand_p_value=0.612392	frequency=1	ks_quality_p_value=0.958489	major_base=G	major_cov=30/28	major_frequency=9.508e-01	minor_base=.	minor_cov=1/2	new_cov=30/28	polymorphism_frequency=9.508e-01	polymorphism_score=2.6	prediction=consensus	ref_cov=1/2	total_cov=31/30
RA	107	.	AE015451	3951159	0	T	C	consensus_score=209.3	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	108	.	AE015451	3951161	0	A	T	consensus_score=200.0	frequency=1	major_base=T	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	109	.	AE015451	4025384	0	T	C	consensus_score=318.6	frequency=1	major_base=C	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	110	.	AE015451	4236779	0	T	G	bias_e_value=6181870	bias_p_value=1	consensus_score=50.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=10/5	major_frequency=9.375e-01	minor_base=T	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=11/5
RA	111	.	AE015451	4348705	0	A	G	bias_e_value=2187200	bias_p_value=0.353809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.7	fisher_strand_p_value=0.650052	frequency=4.463e-01	ks_quality_p_value=0.169921	major_base=A	major_cov=49/49	major_frequency=5.537e-01	minor_base=G	minor_cov=36/43	new_cov=36/43	polymorphism_frequency=4.463e-01	polymorphism_score=242.8	prediction=polymorphism	ref_cov=49/49	total_cov=85/93
RA	112	.	AE015451	4586030	0	C	T	consensus_score=92.1	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	113	.	AE015451	4586031	0	T	C	consensus_score=96.7	frequency=1	major_base=C	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	114	.	AE015451	4586033	1	.	G	consensus_score=100.7	frequency=1	major_base=G	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	115	.	AE015451	4586056	1	.	C	bias_e_value=5820250	bias_p_value=0.941503	consensus_score=101.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.678069	major_base=C	major_cov=12/17	major_frequency=9.667e-01	minor_base=.	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/1	total_cov=12/18
RA	116	.	AE015451	4714831	0	C	A	consensus_score=415.0	frequency=1	major_base=A	major_cov=56/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/60
RA	117	.	AE015451	4740805	0	T	.	consensus_score=307.5	frequency=1	major_base=.	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	118	.	AE015451	4740816	0	T	G	bias_e_value=5199040	bias_p_value=0.841014	consensus_score=239.4	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=0.999519	major_base=G	major_cov=31/33	major_frequency=9.846e-01	minor_base=T	minor_cov=1/0	new_cov=31/33	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/33
RA	119	.	AE015451	4740819	0	T	C	bias_e_value=5200080	bias_p_value=0.841182	consensus_score=238.1	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=31/33	major_frequency=9.846e-01	minor_base=T	minor_cov=1/0	new_cov=31/33	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/33
RA	120	.	AE015451	4740820	0	G	T	consensus_score=224.3	frequency=1	major_base=T	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	121	.	AE015451	4741228	1	.	C	bias_e_value=4965160	bias_p_value=0.80318	consensus_score=224.2	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999454	major_base=C	major_cov=34/26	major_frequency=9.836e-01	minor_base=.	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	122	.	AE015451	4741230	0	A	G	bias_e_value=4966370	bias_p_value=0.803377	consensus_score=222.0	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/26	major_frequency=9.836e-01	minor_base=A	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	123	.	AE015451	4741232	0	C	T	bias_e_value=4965160	bias_p_value=0.80318	consensus_score=209.1	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999454	major_base=T	major_cov=34/26	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	124	.	AE015451	4741235	0	C	T	bias_e_value=4965160	bias_p_value=0.80318	consensus_score=210.4	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999454	major_base=T	major_cov=34/26	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	125	.	AE015451	4741238	0	C	G	bias_e_value=4965160	bias_p_value=0.80318	consensus_score=223.8	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999454	major_base=G	major_cov=34/26	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	126	.	AE015451	4741240	0	A	C	bias_e_value=4966370	bias_p_value=0.803377	consensus_score=227.5	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/26	major_frequency=9.836e-01	minor_base=A	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	127	.	AE015451	4741241	0	C	T	bias_e_value=4965160	bias_p_value=0.80318	consensus_score=210.4	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=0.999454	major_base=T	major_cov=34/26	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=34/27
RA	128	.	AE015451	4741245	0	A	.	bias_e_value=4966370	bias_p_value=0.803377	consensus_score=282.0	fisher_strand_p_value=0.442623	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=34/26	major_frequency=9.836e-01	minor_base=C	minor_cov=0/1	new_cov=34/26	polymorphism_frequency=9.836e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	129	.	AE015451	4741254	1	.	T	consensus_score=216.4	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	130	.	AE015451	4741258	0	A	G	consensus_score=228.0	frequency=1	major_base=G	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	131	.	AE015451	4741261	0	A	.	consensus_score=290.9	frequency=1	major_base=.	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	132	.	AE015451	4741263	0	A	C	consensus_score=227.8	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	133	.	AE015451	4741272	0	A	G	consensus_score=228.1	frequency=1	major_base=G	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	134	.	AE015451	4741274	0	A	C	consensus_score=228.7	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	135	.	AE015451	4741276	0	G	C	consensus_score=230.6	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	136	.	AE015451	4741278	0	C	T	consensus_score=218.4	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	137	.	AE015451	4741283	1	.	T	bias_e_value=6181870	bias_p_value=1	consensus_score=213.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999454	major_base=T	major_cov=33/27	major_frequency=9.836e-01	minor_base=.	minor_cov=1/0	new_cov=33/27	polymorphism_frequency=9.836e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=34/27
RA	138	.	AE015451	4741289	0	C	G	consensus_score=221.4	frequency=1	major_base=G	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	139	.	AE015451	4741292	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	140	.	AE015451	4741294	0	C	G	consensus_score=224.6	frequency=1	major_base=G	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	141	.	AE015451	4741296	0	A	C	consensus_score=228.0	frequency=1	major_base=C	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	142	.	AE015451	4741298	0	C	T	consensus_score=218.5	frequency=1	major_base=T	major_cov=34/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/27
RA	143	.	AE015451	4889556	0	G	A	bias_e_value=5049250	bias_p_value=0.816783	consensus_score=254.1	fisher_strand_p_value=0.459459	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=33/40	major_frequency=9.865e-01	minor_base=G	minor_cov=1/0	new_cov=33/40	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/40
RA	144	.	AE015451	5674750	1	.	G	bias_e_value=6181750	bias_p_value=0.99998	consensus_score=369.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99362	major_base=G	major_cov=47/52	major_frequency=9.802e-01	minor_base=.	minor_cov=1/1	new_cov=47/52	polymorphism_frequency=9.802e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/1	total_cov=48/53
RA	145	.	AE015451	5674753	0	G	C	consensus_score=373.5	frequency=1	major_base=C	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	146	.	AE015451	6013885	0	T	C	bias_e_value=5069840	bias_p_value=0.820114	consensus_score=251.0	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=37/31	major_frequency=9.855e-01	minor_base=A	minor_cov=0/1	new_cov=37/31	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/32
MC	147	.	AE015451	207698	216704	1299	1323	left_inside_cov=26	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
MC	148	.	AE015451	1164572	1165401	0	0	left_inside_cov=0	left_outside_cov=108	right_inside_cov=0	right_outside_cov=108
MC	149	.	AE015451	1551292	1552891	0	0	left_inside_cov=26	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
MC	150	.	AE015451	1644931	1647380	0	0	left_inside_cov=26	left_outside_cov=27	right_inside_cov=25	right_outside_cov=27
MC	151	.	AE015451	1709370	1712009	0	0	left_inside_cov=0	left_outside_cov=79	right_inside_cov=0	right_outside_cov=81
MC	152	.	AE015451	2032505	2034184	0	0	left_inside_cov=0	left_outside_cov=114	right_inside_cov=0	right_outside_cov=114
MC	153	.	AE015451	3276920	3278209	0	0	left_inside_cov=26	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
MC	154	.	AE015451	4236737	4239341	0	0	left_inside_cov=25	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
MC	155	.	AE015451	4892114	4893525	0	0	left_inside_cov=0	left_outside_cov=69	right_inside_cov=0	right_outside_cov=68
MC	156	.	AE015451	5280930	5282379	0	0	left_inside_cov=26	left_outside_cov=27	right_inside_cov=26	right_outside_cov=27
MC	157	.	AE015451	5342745	5344425	0	0	left_inside_cov=0	left_outside_cov=70	right_inside_cov=0	right_outside_cov=74
JC	158	.	AE015451	1	1	AE015451	6181873	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=81	coverage_plus=80	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=300	key=AE015451__1__1__AE015451__6181873__-1__0____301__301__0__0	max_left=299	max_left_minus=299	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=149	max_min_right_minus=145	max_min_right_plus=149	max_pos_hash_score=600	max_right=293	max_right_minus=293	max_right_plus=286	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.54	new_junction_read_count=163	polymorphism_frequency=1.000e+00	pos_hash_score=135	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=161
JC	159	.	AE015451	99230	1	AE015451	5286075	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.278e-02	junction_possible_overlap_registers=292	key=AE015451__99230__1__AE015451__5286067__1__8____301__301__0__0	max_left=285	max_left_minus=285	max_left_plus=186	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=107	max_min_right_minus=64	max_min_right_plus=107	max_pos_hash_score=584	max_right=107	max_right_minus=64	max_right_plus=107	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.278e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.27	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=134	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=3
JC	160	.	AE015451	103875	1	AE015451	5759448	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.317e-02	junction_possible_overlap_registers=292	key=AE015451__103875__1__AE015451__5759456__-1__8____301__301__0__0	max_left=290	max_left_minus=290	max_left_plus=77	max_min_left=135	max_min_left_minus=135	max_min_left_plus=77	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=584	max_right=216	max_right_minus=157	max_right_plus=216	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.317e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=3
JC	161	.	AE015451	259198	1	AE015451	799377	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.335e-02	junction_possible_overlap_registers=300	key=AE015451__259198__1__AE015451__799377__-1__0____301__301__0__0	max_left=139	max_left_minus=139	max_left_plus=135	max_min_left=139	max_min_left_minus=139	max_min_left_plus=135	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=600	max_right=293	max_right_minus=161	max_right_plus=293	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.335e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=136	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=3
JC	162	.	AE015451	533510	1	AE015451	533506	-1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.440e-02	junction_possible_overlap_registers=287	key=AE015451__533497__1__AE015451__533506__-1__13____301__301__1__0	max_left=284	max_left_minus=284	max_left_plus=239	max_min_left=21	max_min_left_minus=0	max_min_left_plus=21	max_min_right=49	max_min_right_minus=12	max_min_right_plus=49	max_pos_hash_score=574	max_right=261	max_right_minus=12	max_right_plus=261	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.440e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=13	side_2_possible_overlap_registers=300	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	163	.	AE015451	550100	1	AE015451	550096	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.458e-02	junction_possible_overlap_registers=287	key=AE015451__550087__1__AE015451__550096__-1__13____301__301__1__0	max_left=284	max_left_minus=284	max_left_plus=191	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=142	max_min_right_minus=85	max_min_right_plus=142	max_pos_hash_score=574	max_right=142	max_right_minus=85	max_right_plus=142	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.458e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=13	side_2_possible_overlap_registers=300	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=5
JC	164	.	AE015451	610901	1	AE015451	812297	-1	0	alignment_overlap=18	coverage_minus=55	coverage_plus=45	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__610883__1__AE015451__812297__-1__18____301__301__1__0	max_left=268	max_left_minus=268	max_left_plus=263	max_min_left=140	max_min_left_minus=140	max_min_left_plus=124	max_min_right=134	max_min_right_minus=132	max_min_right_plus=134	max_pos_hash_score=564	max_right=281	max_right_minus=260	max_right_plus=281	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.03	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=18	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=100
JC	165	.	AE015451	740858	-1	AE015451	779333	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.065e-02	junction_possible_overlap_registers=300	key=AE015451__740858__-1__AE015451__779333__-1__0____301__301__0__0	max_left=288	max_left_minus=288	max_left_plus=130	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=119	max_min_right_minus=119	max_min_right_plus=0	max_pos_hash_score=600	max_right=171	max_right_minus=119	max_right_plus=171	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.065e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=4
JC	166	.	AE015451	812296	1	AE015451	2436567	-1	0	alignment_overlap=7	coverage_minus=49	coverage_plus=44	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__812296__1__AE015451__2436574__-1__7____301__301__0__1	max_left=283	max_left_minus=276	max_left_plus=283	max_min_left=136	max_min_left_minus=136	max_min_left_plus=133	max_min_right=144	max_min_right_minus=144	max_min_right_plus=143	max_pos_hash_score=586	max_right=287	max_right_minus=279	max_right_plus=287	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	167	.	AE015451	1164571	-1	AE015451	1165402	1	-3	alignment_overlap=-3	coverage_minus=49	coverage_plus=53	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__1164571__-1__AE015451__1165402__1__-3__TCA__301__301__0__0	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=147	max_min_left_minus=146	max_min_left_plus=147	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=594	max_right=292	max_right_minus=291	max_right_plus=292	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.02	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102	unique_read_sequence=TCA
JC	168	.	AE015451	1168057	1	AE015451	5566338	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.449e-02	junction_possible_overlap_registers=300	key=AE015451__1168057__1__AE015451__5566338__-1__0____301__301__0__0	max_left=293	max_left_minus=293	max_left_plus=125	max_min_left=125	max_min_left_minus=0	max_min_left_plus=125	max_min_right=127	max_min_right_minus=127	max_min_right_plus=0	max_pos_hash_score=600	max_right=175	max_right_minus=127	max_right_plus=175	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.449e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=130	side_2_redundant=0	total_non_overlap_reads=3
JC	169	.	AE015451	1325535	1	AE015451	1626616	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=4.390e-02	junction_possible_overlap_registers=297	key=AE015451__1325532__1__AE015451__1626616__1__3____301__301__1__0	max_left=297	max_left_minus=297	max_left_plus=98	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=141	max_min_right_minus=141	max_min_right_plus=0	max_pos_hash_score=594	max_right=178	max_right_minus=141	max_right_plus=178	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.390e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=3	side_2_possible_overlap_registers=300	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	170	.	AE015451	1342009	1	AE015451	2677353	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.210e-02	junction_possible_overlap_registers=291	key=AE015451__1342009__1__AE015451__2677362__-1__9____301__301__0__0	max_left=291	max_left_minus=291	max_left_plus=101	max_min_left=101	max_min_left_minus=101	max_min_left_plus=101	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=582	max_right=183	max_right_minus=183	max_right_plus=183	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.210e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=9	side_1_possible_overlap_registers=300	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	171	.	AE015451	1491393	-1	AE015451	5347685	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=4.261e-02	junction_possible_overlap_registers=299	key=AE015451__1491393__-1__AE015451__5347684__1__1____301__301__0__0	max_left=299	max_left_minus=299	max_left_plus=128	max_min_left=128	max_min_left_minus=128	max_min_left_plus=128	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=598	max_right=155	max_right_minus=155	max_right_plus=155	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.261e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=1	side_1_possible_overlap_registers=300	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=3
JC	172	.	AE015451	1600156	1	AE015451	3120807	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=3.659e-02	junction_possible_overlap_registers=300	key=AE015451__1600156__1__AE015451__3120807__-1__0____301__301__0__0	max_left=173	max_left_minus=173	max_left_plus=140	max_min_left=140	max_min_left_minus=0	max_min_left_plus=140	max_min_right=128	max_min_right_minus=128	max_min_right_plus=0	max_pos_hash_score=600	max_right=294	max_right_minus=128	max_right_plus=294	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.659e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=3
JC	173	.	AE015451	1709369	-1	AE015451	1712010	1	-7	alignment_overlap=-7	coverage_minus=38	coverage_plus=36	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__1709369__-1__AE015451__1712010__1__-7__CGGCCGC__301__301__0__0	max_left=288	max_left_minus=273	max_left_plus=288	max_min_left=145	max_min_left_minus=145	max_min_left_plus=144	max_min_right=146	max_min_right_minus=146	max_min_right_plus=131	max_pos_hash_score=586	max_right=290	max_right_minus=290	max_right_plus=285	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.76	new_junction_read_count=79	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74	unique_read_sequence=CGGCCGC
JC	174	.	AE015451	1753130	1	AE015451	5837125	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=1.729e-02	junction_possible_overlap_registers=300	key=AE015451__1753130__1__AE015451__5837125__-1__0____301__301__0__0	max_left=293	max_left_minus=293	max_left_plus=121	max_min_left=121	max_min_left_minus=0	max_min_left_plus=121	max_min_right=105	max_min_right_minus=105	max_min_right_plus=0	max_pos_hash_score=600	max_right=179	max_right_minus=105	max_right_plus=179	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.729e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.57	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=272	side_2_redundant=0	total_non_overlap_reads=3
JC	175	.	AE015451	1891807	1	AE015451	5332033	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.961e-02	junction_possible_overlap_registers=296	key=AE015451__1891807__1__AE015451__5332029__1__4____301__301__0__0	max_left=226	max_left_minus=226	max_left_plus=149	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=148	max_min_right_minus=71	max_min_right_plus=148	max_pos_hash_score=592	max_right=278	max_right_minus=71	max_right_plus=278	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.961e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=4	side_1_possible_overlap_registers=300	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	176	.	AE015451	2032504	-1	AE015451	2034185	1	-8	alignment_overlap=-8	coverage_minus=55	coverage_plus=55	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__2032504__-1__AE015451__2034185__1__-8__GCGGCCGC__301__301__0__0	max_left=289	max_left_minus=289	max_left_plus=279	max_min_left=142	max_min_left_minus=142	max_min_left_plus=141	max_min_right=146	max_min_right_minus=140	max_min_right_plus=146	max_pos_hash_score=584	max_right=292	max_right_minus=292	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.09	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=100	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110	unique_read_sequence=GCGGCCGC
JC	177	.	AE015451	2097982	-1	AE015451	3543096	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.453e-02	junction_possible_overlap_registers=295	key=AE015451__2097982__-1__AE015451__3543091__1__5____301__301__0__0	max_left=277	max_left_minus=277	max_left_plus=196	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=100	max_min_right_minus=63	max_min_right_plus=100	max_pos_hash_score=590	max_right=100	max_right_minus=63	max_right_plus=100	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.453e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=5	side_1_possible_overlap_registers=300	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	178	.	AE015451	2219941	1	AE015451	2311042	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.209e-02	junction_possible_overlap_registers=300	key=AE015451__2219941__1__AE015451__2311042__1__0____301__301__0__0	max_left=300	max_left_minus=300	max_left_plus=124	max_min_left=124	max_min_left_minus=124	max_min_left_plus=124	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=600	max_right=177	max_right_minus=177	max_right_plus=176	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.209e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=3
JC	179	.	AE015451	2230724	-1	AE015451	2436301	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.878e-02	junction_possible_overlap_registers=300	key=AE015451__2230724__-1__AE015451__2436301__-1__0____301__301__0__1	max_left=179	max_left_minus=179	max_left_plus=160	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=141	max_min_right_minus=122	max_min_right_plus=141	max_pos_hash_score=600	max_right=298	max_right_minus=122	max_right_plus=298	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.878e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	180	.	AE015451	2274457	1	AE015451	5319907	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.821e-02	junction_possible_overlap_registers=292	key=AE015451__2274457__1__AE015451__5319899__1__8____301__301__0__0	max_left=292	max_left_minus=292	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=584	max_right=195	max_right_minus=195	max_right_plus=195	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.821e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	181	.	AE015451	2457220	1	AE015451	5978413	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=2.521e-02	junction_possible_overlap_registers=291	key=AE015451__2457220__1__AE015451__5978422__-1__9____301__301__0__0	max_left=176	max_left_minus=176	max_left_plus=160	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=132	max_min_right_minus=116	max_min_right_plus=132	max_pos_hash_score=582	max_right=291	max_right_minus=116	max_right_plus=291	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.521e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=9	side_1_possible_overlap_registers=300	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.18	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=224	side_2_redundant=0	total_non_overlap_reads=4
JC	182	.	AE015451	2630007	1	AE015451	5531666	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.679e-02	junction_possible_overlap_registers=300	key=AE015451__2630007__1__AE015451__5531666__-1__0____301__301__0__0	max_left=177	max_left_minus=177	max_left_plus=123	max_min_left=123	max_min_left_minus=0	max_min_left_plus=123	max_min_right=123	max_min_right_minus=123	max_min_right_plus=0	max_pos_hash_score=600	max_right=299	max_right_minus=123	max_right_plus=299	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.679e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=3
JC	183	.	AE015451	2662377	1	AE015451	4013005	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=3.738e-02	junction_possible_overlap_registers=287	key=AE015451__2662377__1__AE015451__4012992__1__13____301__301__0__0	max_left=186	max_left_minus=186	max_left_plus=91	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=102	max_min_right_minus=102	max_min_right_plus=0	max_pos_hash_score=574	max_right=282	max_right_minus=102	max_right_plus=282	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.738e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=13	side_1_possible_overlap_registers=300	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	184	.	AE015451	2937901	1	AE015451	3000454	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=6.491e-02	junction_possible_overlap_registers=292	key=AE015451__2937893__1__AE015451__3000454__-1__8____301__301__1__0	max_left=290	max_left_minus=290	max_left_plus=118	max_min_left=118	max_min_left_minus=118	max_min_left_plus=118	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=584	max_right=153	max_right_minus=153	max_right_plus=153	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.491e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=8	side_2_possible_overlap_registers=300	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	185	.	AE015451	3488625	-1	AE015451	5722310	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.236e-02	junction_possible_overlap_registers=299	key=AE015451__3488625__-1__AE015451__5722310__-1__-1__A__301__301__0__0	max_left=289	max_left_minus=289	max_left_plus=110	max_min_left=110	max_min_left_minus=0	max_min_left_plus=110	max_min_right=104	max_min_right_minus=104	max_min_right_plus=0	max_pos_hash_score=598	max_right=187	max_right_minus=104	max_right_plus=187	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.236e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=A
JC	186	.	AE015451	3852938	-1	AE015451	5942505	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=1.911e-02	junction_possible_overlap_registers=300	key=AE015451__3852938__-1__AE015451__5942505__1__0____301__301__0__0	max_left=281	max_left_minus=281	max_left_plus=106	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=140	max_min_right_minus=140	max_min_right_plus=0	max_pos_hash_score=600	max_right=195	max_right_minus=140	max_right_plus=195	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.911e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.05	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=217	side_2_redundant=0	total_non_overlap_reads=3
JC	187	.	AE015451	4062257	1	AE015451	5861761	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.796e-02	junction_possible_overlap_registers=300	key=AE015451__4062257__1__AE015451__5861761__-1__0____301__301__0__0	max_left=221	max_left_minus=221	max_left_plus=131	max_min_left=131	max_min_left_minus=0	max_min_left_plus=131	max_min_right=80	max_min_right_minus=80	max_min_right_plus=0	max_pos_hash_score=600	max_right=291	max_right_minus=80	max_right_plus=291	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.796e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.15	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=228	side_2_redundant=0	total_non_overlap_reads=3
JC	188	.	AE015451	4302676	-1	AE015451	5454703	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=3.146e-02	junction_possible_overlap_registers=293	key=AE015451__4302676__-1__AE015451__5454710__-1__7____301__301__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=291	max_right_minus=0	max_right_plus=291	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.146e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=3
JC	189	.	AE015451	4502882	-1	AE015451	5891184	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.676e-02	junction_possible_overlap_registers=297	key=AE015451__4502882__-1__AE015451__5891181__1__3____301__301__0__0	max_left=129	max_left_minus=129	max_left_plus=103	max_min_left=129	max_min_left_minus=129	max_min_left_plus=103	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=594	max_right=273	max_right_minus=169	max_right_plus=273	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.676e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.42	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=254	side_2_redundant=0	total_non_overlap_reads=3
JC	190	.	AE015451	4535456	1	AE015451	5461811	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.120e-02	junction_possible_overlap_registers=296	key=AE015451__4535456__1__AE015451__5461815__-1__4____301__301__0__0	max_left=165	max_left_minus=165	max_left_plus=143	max_min_left=143	max_min_left_minus=0	max_min_left_plus=143	max_min_right=131	max_min_right_minus=131	max_min_right_plus=0	max_pos_hash_score=592	max_right=281	max_right_minus=131	max_right_plus=281	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.120e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=4	side_1_possible_overlap_registers=300	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=3
JC	191	.	AE015451	4769220	-1	AE015451	5772390	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.523e-02	junction_possible_overlap_registers=289	key=AE015451__4769220__-1__AE015451__5772379__1__11____301__301__0__0	max_left=289	max_left_minus=289	max_left_plus=95	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=578	max_right=194	max_right_minus=68	max_right_plus=194	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.523e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=11	side_1_possible_overlap_registers=300	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.27	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=231	side_2_redundant=0	total_non_overlap_reads=4
JC	192	.	AE015451	4808174	1	AE015451	5988935	-1	0	alignment_overlap=35	coverage_minus=6	coverage_plus=9	flanking_left=301	flanking_right=301	frequency=5.053e-01	junction_possible_overlap_registers=265	key=AE015451__4808174__1__AE015451__5988970__-1__35____301__301__0__0	max_left=263	max_left_minus=251	max_left_plus=263	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=75	max_min_right_minus=71	max_min_right_plus=75	max_pos_hash_score=530	max_right=75	max_right_minus=71	max_right_plus=75	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.26	new_junction_read_count=24	polymorphism_frequency=5.053e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=35	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=15
JC	193	.	AE015451	4808179	-1	AE015451	5988765	1	0	alignment_overlap=12	coverage_minus=18	coverage_plus=19	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=288	key=AE015451__4808179__-1__AE015451__5988753__1__12____301__301__0__0	max_left=280	max_left_minus=280	max_left_plus=270	max_min_left=135	max_min_left_minus=0	max_min_left_plus=135	max_min_right=144	max_min_right_minus=144	max_min_right_plus=140	max_pos_hash_score=576	max_right=184	max_right_minus=144	max_right_plus=184	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.49	new_junction_read_count=50	polymorphism_frequency=8.812e-01	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=12	side_1_possible_overlap_registers=300	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=37
JC	194	.	AE015451	4892113	-1	AE015451	4893526	1	-8	alignment_overlap=-8	coverage_minus=30	coverage_plus=32	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__4892113__-1__AE015451__4893526__1__-8__GCGGCCGC__301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=278	max_min_left=146	max_min_left_minus=137	max_min_left_plus=146	max_min_right=145	max_min_right_minus=145	max_min_right_plus=143	max_pos_hash_score=584	max_right=286	max_right_minus=286	max_right_plus=264	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.64	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=GCGGCCGC
JC	195	.	AE015451	4892113	-1	AE015451	4893627	1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.191e-01	junction_possible_overlap_registers=295	key=AE015451__4892113__-1__AE015451__4893627__1__-5__GCGGC__301__301__0__0	max_left=267	max_left_minus=267	max_left_plus=267	max_min_left=82	max_min_left_minus=81	max_min_left_plus=82	max_min_right=11	max_min_right_minus=11	max_min_right_plus=9	max_pos_hash_score=590	max_right=193	max_right_minus=193	max_right_plus=193	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=2.191e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.27	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GCGGC
JC	196	.	AE015451	4896440	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=48	coverage_plus=49	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__4896440__1__AE015451__5756790__1__18____301__301__0__1	max_left=278	max_left_minus=264	max_left_plus=278	max_min_left=140	max_min_left_minus=140	max_min_left_plus=137	max_min_right=135	max_min_right_minus=135	max_min_right_plus=129	max_pos_hash_score=564	max_right=266	max_right_minus=266	max_right_plus=250	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.98	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	197	.	AE015451	4896441	-1	AE015451	5220211	-1	0	alignment_overlap=7	coverage_minus=46	coverage_plus=46	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__4896441__-1__AE015451__5220218__-1__7____301__301__0__1	max_left=292	max_left_minus=269	max_left_plus=292	max_min_left=145	max_min_left_minus=145	max_min_left_plus=138	max_min_right=147	max_min_right_minus=145	max_min_right_plus=147	max_pos_hash_score=586	max_right=288	max_right_minus=288	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.94	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=92
JC	198	.	AE015451	4930062	1	AE015451	5959967	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.630e-02	junction_possible_overlap_registers=300	key=AE015451__4930062__1__AE015451__5959967__1__0____301__301__0__0	max_left=148	max_left_minus=148	max_left_plus=68	max_min_left=148	max_min_left_minus=148	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=600	max_right=297	max_right_minus=153	max_right_plus=297	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.630e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=112	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.36	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=250	side_2_redundant=0	total_non_overlap_reads=3
JC	199	.	AE015451	4980585	-1	AE015451	4980586	1	-3	alignment_overlap=-3	coverage_minus=44	coverage_plus=41	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__4980585__-1__AE015451__4980586__1__-3__GGC__301__301__0__0	max_left=281	max_left_minus=281	max_left_plus=277	max_min_left=144	max_min_left_minus=144	max_min_left_plus=144	max_min_right=145	max_min_right_minus=135	max_min_right_plus=145	max_pos_hash_score=594	max_right=296	max_right_minus=296	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.87	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=GGC
JC	200	.	AE015451	5342744	-1	AE015451	5344426	1	-8	alignment_overlap=-8	coverage_minus=32	coverage_plus=38	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__5342744__-1__AE015451__5344426__1__-8__GCGGCCGC__301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=278	max_min_left=146	max_min_left_minus=132	max_min_left_plus=146	max_min_right=146	max_min_right_minus=135	max_min_right_plus=146	max_pos_hash_score=584	max_right=290	max_right_minus=268	max_right_plus=290	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.68	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70	unique_read_sequence=GCGGCCGC
JC	201	.	AE015451	5513317	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=47	coverage_plus=50	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5513317__1__AE015451__5756790__1__18____301__301__0__1	max_left=281	max_left_minus=281	max_left_plus=281	max_min_left=141	max_min_left_minus=140	max_min_left_plus=141	max_min_right=137	max_min_right_minus=134	max_min_right_plus=137	max_pos_hash_score=564	max_right=266	max_right_minus=266	max_right_plus=260	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=87	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=97
JC	202	.	AE015451	5513318	-1	AE015451	5758121	-1	0	alignment_overlap=7	coverage_minus=47	coverage_plus=62	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5513318__-1__AE015451__5758128__-1__7____301__301__0__1	max_left=292	max_left_minus=292	max_left_plus=290	max_min_left=138	max_min_left_minus=137	max_min_left_plus=138	max_min_right=143	max_min_right_minus=128	max_min_right_plus=143	max_pos_hash_score=586	max_right=286	max_right_minus=285	max_right_plus=286	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.11	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=109
JC	203	.	AE015451	5531116	1	AE015451	5801582	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=1.658e-02	junction_possible_overlap_registers=299	key=AE015451__5531116__1__AE015451__5801582__1__-1__T__301__301__0__0	max_left=296	max_left_minus=296	max_left_plus=96	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=598	max_right=198	max_right_minus=71	max_right_plus=198	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.658e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.21	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=234	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=T
JC	204	.	AE015451	5545080	1	AE015451	5545666	-1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=8	flanking_left=301	flanking_right=301	frequency=7.688e-01	junction_possible_overlap_registers=297	key=AE015451__5545080__1__AE015451__5545669__-1__3____301__301__0__1	max_left=294	max_left_minus=290	max_left_plus=294	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=594	max_right=59	max_right_minus=59	max_right_plus=59	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=3.33	new_junction_read_count=349	polymorphism_frequency=7.688e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	205	.	AE015451	5555608	-1	AE015451	5555609	1	-3	alignment_overlap=-3	coverage_minus=51	coverage_plus=55	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__5555608__-1__AE015451__5555609__1__-3__GCC__301__301__0__0	max_left=294	max_left_minus=294	max_left_plus=282	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=146	max_min_right_minus=143	max_min_right_plus=146	max_pos_hash_score=594	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=118	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106	unique_read_sequence=GCC
JC	206	.	AE015451	5599715	-1	AE015451	6154154	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.500e-02	junction_possible_overlap_registers=300	key=AE015451__5599715__-1__AE015451__6154154__-1__0____301__301__0__1	max_left=297	max_left_minus=297	max_left_plus=121	max_min_left=133	max_min_left_minus=133	max_min_left_plus=121	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=600	max_right=176	max_right_minus=168	max_right_plus=176	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.500e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	207	.	AE015451	5681415	-1	AE015451	5681416	1	-4	alignment_overlap=-4	coverage_minus=47	coverage_plus=49	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=296	key=AE015451__5681415__-1__AE015451__5681416__1__-4__CGGG__301__301__0__0	max_left=295	max_left_minus=295	max_left_plus=285	max_min_left=138	max_min_left_minus=138	max_min_left_plus=131	max_min_right=147	max_min_right_minus=146	max_min_right_plus=147	max_pos_hash_score=592	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=102	polymorphism_frequency=1.000e+00	pos_hash_score=85	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96	unique_read_sequence=CGGG
JC	208	.	AE015451	5696567	-1	AE015451	5696629	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=12	flanking_left=301	flanking_right=301	frequency=4.114e-01	junction_possible_overlap_registers=292	key=AE015451__5696567__-1__AE015451__5696621__1__8____301__301__0__0	max_left=261	max_left_minus=0	max_left_plus=261	max_min_left=140	max_min_left_minus=0	max_min_left_plus=140	max_min_right=130	max_min_right_minus=0	max_min_right_plus=130	max_pos_hash_score=584	max_right=284	max_right_minus=0	max_right_plus=284	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=4.114e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=12
JC	209	.	AE015451	5803120	1	AE015451	5900265	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.213e-02	junction_possible_overlap_registers=298	key=AE015451__5803120__1__AE015451__5900267__-1__2____301__301__0__0	max_left=165	max_left_minus=165	max_left_plus=73	max_min_left=73	max_min_left_minus=0	max_min_left_plus=73	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=596	max_right=284	max_right_minus=134	max_right_plus=284	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.213e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.19	side_1_overlap=2	side_1_possible_overlap_registers=300	side_1_read_count=232	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.45	side_2_overlap=0	side_2_possible_overlap_registers=298	side_2_read_count=258	side_2_redundant=0	total_non_overlap_reads=3
JC	210	.	AE015451	5880817	-1	AE015451	5908358	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.431e-02	junction_possible_overlap_registers=300	key=AE015451__5880817__-1__AE015451__5908358__-1__0____301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=91	max_min_left=134	max_min_left_minus=134	max_min_left_plus=91	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=600	max_right=300	max_right_minus=167	max_right_plus=300	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=1.431e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.27	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=240	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.94	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=311	side_2_redundant=0	total_non_overlap_reads=4
JC	211	.	AE015451	5903776	-1	AE015451	5903839	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=1.519e-02	junction_possible_overlap_registers=293	key=AE015451__5903776__-1__AE015451__5903832__1__7____301__301__0__0	max_left=225	max_left_minus=225	max_left_plus=173	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=121	max_min_right_minus=103	max_min_right_plus=121	max_pos_hash_score=586	max_right=121	max_right_minus=103	max_right_plus=121	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.519e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.98	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=209	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.79	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=185	side_2_redundant=0	total_non_overlap_reads=3
JC	212	.	AE015451	5984436	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=55	coverage_plus=55	flanking_left=301	flanking_right=301	frequency=5.972e-01	junction_possible_overlap_registers=282	key=AE015451__5984436__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=276	max_left_minus=276	max_left_plus=276	max_min_left=140	max_min_left_minus=126	max_min_left_plus=140	max_min_right=140	max_min_right_minus=133	max_min_right_plus=140	max_pos_hash_score=564	max_right=270	max_right_minus=270	max_right_plus=269	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.32	new_junction_read_count=131	polymorphism_frequency=5.972e-01	pos_hash_score=100	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=110
JC	213	.	AE015451	5988787	1	AE015451	6037870	1	0	alignment_overlap=7	coverage_minus=54	coverage_plus=63	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5988787__1__AE015451__6037863__1__7____301__301__0__1	max_left=293	max_left_minus=291	max_left_plus=293	max_min_left=144	max_min_left_minus=116	max_min_left_plus=144	max_min_right=146	max_min_right_minus=140	max_min_right_plus=146	max_pos_hash_score=586	max_right=288	max_right_minus=285	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.21	new_junction_read_count=125	polymorphism_frequency=1.000e+00	pos_hash_score=104	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=117
JC	214	.	AE015451	5988788	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=56	coverage_plus=63	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5988788__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=274	max_left_minus=272	max_left_plus=274	max_min_left=138	max_min_left_minus=133	max_min_left_plus=138	max_min_right=138	max_min_right_minus=127	max_min_right_plus=138	max_pos_hash_score=564	max_right=278	max_right_minus=277	max_right_plus=278	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.26	new_junction_read_count=125	polymorphism_frequency=1.000e+00	pos_hash_score=103	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
UN	215	.	AE015451	171549	173192
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UN	327	.	AE015451	5311392	5312677
UN	328	.	AE015451	5342745	5344425
UN	329	.	AE015451	5402023	5403520
UN	330	.	AE015451	5453280	5454432
UN	331	.	AE015451	5757067	5757842
UN	332	.	AE015451	6038132	6038920
UN	333	.	AE015451	6153191	6155016