#=GENOME_DIFF	1.0
#=CREATED	12:50:10 29 Apr 2021
#=PROGRAM	breseq 0.35.5 revision 9f368df52761
#=COMMAND	breseq -r ../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff -o ABF018_02/ ABF018_01/ABF018_S18_L001_R1_001_ptrim.fq ABF018_01/ABF018_S18_L001_R2_001_ptrim.fq
#=REFSEQ	../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff
#=READSEQ	ABF018_01/ABF018_S18_L001_R1_001_ptrim.fq
#=READSEQ	ABF018_01/ABF018_S18_L001_R2_001_ptrim.fq
#=CONVERTED-BASES	540313085
#=CONVERTED-READS	1950262
#=INPUT-BASES	540319714
#=INPUT-READS	1950288
#=MAPPED-BASES	535095748
#=MAPPED-READS	1928006
SNP	1	60	AE015451	187648	A
INS	2	71	AE015451	278744	A
INS	3	72	AE015451	307866	C
INS	4	73	AE015451	336125	T
SNP	5	74	AE015451	353067	G
SNP	6	75	AE015451	499203	G
INS	7	79	AE015451	1126647	C
SUB	8	147,167	AE015451	1164572	830	TCA
INS	9	81	AE015451	1419549	C
SUB	10	82,83	AE015451	1499480	2	AC
SUB	11	84,85	AE015451	1499498	1	CG
INS	12	86	AE015451	1499508	C
SUB	13	150,171	AE015451	1709370	2640	CGGCCGC
INS	14	87	AE015451	1932640	C
SUB	15	151,175	AE015451	2032505	1680	GCGGCCGC
SNP	16	89	AE015451	2935792	A
SNP	17	90	AE015451	2958523	T
DEL	18	91	AE015451	3137784	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
INS	19	92	AE015451	3845705	G
SNP	20	93	AE015451	3951159	C
SNP	21	94	AE015451	3951161	T
SNP	22	96	AE015451	4025384	C
SUB	23	101,102	AE015451	4586030	2	TC
INS	24	103	AE015451	4586035	G
INS	25	104	AE015451	4586057	C
SNP	26	105	AE015451	4714831	A
DEL	27	106	AE015451	4740811	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	28	107	AE015451	4740816	G
SUB	29	108,109	AE015451	4740819	2	CT
INS	30	110	AE015451	4741228	C
SNP	31	111	AE015451	4741230	G
SNP	32	112	AE015451	4741232	T
SNP	33	113	AE015451	4741235	T
SNP	34	114	AE015451	4741238	G
SUB	35	115,116	AE015451	4741240	2	CT
DEL	36	117	AE015451	4741246	1
INS	37	118	AE015451	4741254	T
SNP	38	119	AE015451	4741258	G
DEL	39	120	AE015451	4741262	1
SNP	40	121	AE015451	4741263	C
SNP	41	122	AE015451	4741272	G
SNP	42	123	AE015451	4741274	C
SNP	43	124	AE015451	4741276	C
SNP	44	125	AE015451	4741278	T
INS	45	126	AE015451	4741283	T
SNP	46	127	AE015451	4741289	G
SNP	47	128	AE015451	4741292	T
SNP	48	129	AE015451	4741294	G
SNP	49	130	AE015451	4741296	C
SNP	50	131	AE015451	4741298	T
SNP	51	143	AE015451	4889556	A
SUB	52	154,194	AE015451	4892114	1412	GCGGCCGC
INS	53	198	AE015451	4980585	GGC
SUB	54	156,200	AE015451	5342745	1681	GCGGCCGC
INS	55	203	AE015451	5555608	GCC
INS	56	144	AE015451	5674751	G
SNP	57	145	AE015451	5674753	C
INS	58	204	AE015451	5681415	CGGG
SNP	59	146	AE015451	6013885	C
RA	60	.	AE015451	187648	0	T	A	consensus_score=344.7	frequency=1	major_base=A	major_cov=50/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/44
RA	61	.	AE015451	195505	0	C	G	bias_e_value=5878820	bias_p_value=0.950977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.0	fisher_strand_p_value=0.810838	frequency=3.049e-01	ks_quality_p_value=0.867849	major_base=C	major_cov=29/28	major_frequency=6.951e-01	minor_base=G	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=3.049e-01	polymorphism_score=86.0	prediction=polymorphism	ref_cov=29/28	total_cov=43/39
RA	62	.	AE015451	195559	0	C	A	bias_e_value=1700690	bias_p_value=0.27511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.1	fisher_strand_p_value=0.536213	frequency=4.184e-01	ks_quality_p_value=0.144099	major_base=C	major_cov=30/27	major_frequency=5.816e-01	minor_base=A	minor_cov=25/16	new_cov=25/16	polymorphism_frequency=4.184e-01	polymorphism_score=133.2	prediction=polymorphism	ref_cov=30/27	total_cov=55/43
RA	63	.	AE015451	195634	0	C	T	bias_e_value=2951470	bias_p_value=0.47744	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.7	fisher_strand_p_value=0.853823	frequency=4.132e-01	ks_quality_p_value=0.203231	major_base=C	major_cov=38/33	major_frequency=5.868e-01	minor_base=T	minor_cov=28/22	new_cov=28/22	polymorphism_frequency=4.132e-01	polymorphism_score=141.7	prediction=polymorphism	ref_cov=38/33	total_cov=66/55
RA	64	.	AE015451	196372	0	A	G	bias_e_value=5801950	bias_p_value=0.938543	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=0.688776	frequency=3.070e-01	ks_quality_p_value=0.973549	major_base=A	major_cov=44/35	major_frequency=6.930e-01	minor_base=G	minor_cov=18/17	new_cov=18/17	polymorphism_frequency=3.070e-01	polymorphism_score=93.8	prediction=polymorphism	ref_cov=44/35	total_cov=62/52
RA	65	.	AE015451	196432	0	T	C	bias_e_value=6105910	bias_p_value=0.987712	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.3	fisher_strand_p_value=1	frequency=2.091e-01	ks_quality_p_value=0.847386	major_base=T	major_cov=43/44	major_frequency=7.909e-01	minor_base=C	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=2.091e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=43/44	total_cov=54/58
RA	66	.	AE015451	196438	0	T	C	bias_e_value=4181380	bias_p_value=0.676393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.3	fisher_strand_p_value=0.315939	frequency=3.486e-01	ks_quality_p_value=0.990228	major_base=T	major_cov=36/35	major_frequency=6.514e-01	minor_base=C	minor_cov=15/23	new_cov=15/23	polymorphism_frequency=3.486e-01	polymorphism_score=102.9	prediction=polymorphism	ref_cov=36/35	total_cov=51/59
RA	67	.	AE015451	196459	0	C	A	bias_e_value=5810260	bias_p_value=0.939886	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.4	fisher_strand_p_value=0.840596	frequency=3.214e-01	ks_quality_p_value=0.801741	major_base=C	major_cov=36/40	major_frequency=6.786e-01	minor_base=A	minor_cov=16/20	new_cov=16/20	polymorphism_frequency=3.214e-01	polymorphism_score=106.6	prediction=polymorphism	ref_cov=36/40	total_cov=55/61
RA	68	.	AE015451	196495	0	G	C	bias_e_value=5936430	bias_p_value=0.960296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.0	fisher_strand_p_value=1	frequency=3.636e-01	ks_quality_p_value=0.731778	major_base=G	major_cov=38/39	major_frequency=6.364e-01	minor_base=C	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.636e-01	polymorphism_score=164.0	prediction=polymorphism	ref_cov=38/39	total_cov=61/62
RA	69	.	AE015451	196579	0	G	A	bias_e_value=4768160	bias_p_value=0.771313	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.5	fisher_strand_p_value=1	frequency=3.214e-01	ks_quality_p_value=0.405273	major_base=G	major_cov=35/41	major_frequency=6.786e-01	minor_base=A	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=3.214e-01	polymorphism_score=98.1	prediction=polymorphism	ref_cov=35/41	total_cov=55/62
RA	70	.	AE015451	196879	0	G	A	bias_e_value=5149540	bias_p_value=0.833006	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.4	fisher_strand_p_value=0.572217	frequency=3.154e-01	ks_quality_p_value=0.840514	major_base=G	major_cov=40/49	major_frequency=6.846e-01	minor_base=A	minor_cov=21/20	new_cov=21/20	polymorphism_frequency=3.154e-01	polymorphism_score=106.5	prediction=polymorphism	ref_cov=40/49	total_cov=64/70
RA	71	.	AE015451	278742	1	.	A	consensus_score=236.9	frequency=1	major_base=A	major_cov=35/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/30
RA	72	.	AE015451	307865	1	.	C	consensus_score=464.9	frequency=1	major_base=C	major_cov=63/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/59
RA	73	.	AE015451	336124	1	.	T	bias_e_value=5151910	bias_p_value=0.83339	consensus_score=189.2	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/25	major_frequency=9.815e-01	minor_base=C	minor_cov=0/1	new_cov=28/25	polymorphism_frequency=9.815e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	74	.	AE015451	353067	0	A	G	consensus_score=86.3	frequency=1	major_base=G	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	75	.	AE015451	499203	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=177.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999184	major_base=G	major_cov=22/27	major_frequency=9.800e-01	minor_base=A	minor_cov=0/1	new_cov=22/27	polymorphism_frequency=9.800e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=22/28
RA	76	.	AE015451	699722	0	A	G	bias_e_value=5946280	bias_p_value=0.961889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=0.736937	frequency=5.143e-01	ks_quality_p_value=1	major_base=G	major_cov=34/38	major_frequency=5.143e-01	minor_base=A	minor_cov=30/38	new_cov=34/38	polymorphism_frequency=5.143e-01	polymorphism_score=203.8	prediction=polymorphism	ref_cov=30/38	total_cov=64/76
RA	77	.	AE015451	1070246	1	.	G	bias_e_value=5734090	bias_p_value=0.927565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.9	fisher_strand_p_value=0.66087	frequency=7.600e-01	ks_quality_p_value=0.975053	major_base=G	major_cov=9/10	major_frequency=7.600e-01	minor_base=.	minor_cov=2/4	new_cov=9/10	polymorphism_frequency=7.600e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=2/4	total_cov=11/14
RA	78	.	AE015451	1070246	2	.	A	bias_e_value=5595440	bias_p_value=0.905136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.0	fisher_strand_p_value=0.66087	frequency=7.600e-01	ks_quality_p_value=0.903885	major_base=A	major_cov=9/10	major_frequency=7.600e-01	minor_base=.	minor_cov=2/4	new_cov=9/10	polymorphism_frequency=7.600e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=2/4	total_cov=11/14
RA	79	.	AE015451	1126645	1	.	C	consensus_score=205.5	frequency=1	major_base=C	major_cov=27/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	80	.	AE015451	1327121	0	C	T	bias_e_value=2868840	bias_p_value=0.464072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.5	fisher_strand_p_value=0.385783	frequency=4.254e-01	ks_quality_p_value=0.430258	major_base=C	major_cov=37/40	major_frequency=5.746e-01	minor_base=T	minor_cov=32/25	new_cov=32/25	polymorphism_frequency=4.254e-01	polymorphism_score=169.6	prediction=polymorphism	ref_cov=37/40	total_cov=69/65
RA	81	.	AE015451	1419548	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=94.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=12/14	major_frequency=9.630e-01	minor_base=.	minor_cov=0/1	new_cov=12/14	polymorphism_frequency=9.630e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=12/15
RA	82	.	AE015451	1499480	0	C	A	bias_e_value=5177450	bias_p_value=0.837521	consensus_score=131.4	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=18/20	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=18/20	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/20
RA	83	.	AE015451	1499481	0	A	C	consensus_score=130.7	frequency=1	major_base=C	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	84	.	AE015451	1499497	1	.	C	bias_e_value=6180910	bias_p_value=0.999845	consensus_score=145.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982437	major_base=C	major_cov=21/21	major_frequency=9.767e-01	minor_base=A	minor_cov=1/0	new_cov=21/21	polymorphism_frequency=9.767e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	85	.	AE015451	1499498	0	T	G	consensus_score=152.5	frequency=1	major_base=G	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	86	.	AE015451	1499506	1	.	C	bias_e_value=6165580	bias_p_value=0.997365	consensus_score=147.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.928283	major_base=C	major_cov=23/20	major_frequency=9.556e-01	minor_base=.	minor_cov=1/1	new_cov=23/20	polymorphism_frequency=9.556e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/1	total_cov=24/21
RA	87	.	AE015451	1932638	1	.	C	consensus_score=137.6	frequency=1	major_base=C	major_cov=23/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/16
RA	88	.	AE015451	2550125	0	G	A	bias_e_value=4878240	bias_p_value=0.789119	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=1	frequency=5.976e-01	ks_quality_p_value=0.425539	major_base=A	major_cov=24/25	major_frequency=5.976e-01	minor_base=G	minor_cov=16/17	new_cov=24/25	polymorphism_frequency=5.976e-01	polymorphism_score=98.3	prediction=polymorphism	ref_cov=16/17	total_cov=40/43
RA	89	.	AE015451	2935792	0	G	A	bias_e_value=6181870	bias_p_value=1	consensus_score=313.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999739	major_base=A	major_cov=46/41	major_frequency=9.886e-01	minor_base=T	minor_cov=1/0	new_cov=46/41	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	90	.	AE015451	2958523	0	C	T	consensus_score=205.4	frequency=1	major_base=T	major_cov=29/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/28
RA	91	.	AE015451	3137776	0	T	.	bias_e_value=6181870	bias_p_value=1	consensus_score=347.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=43/31	major_frequency=9.737e-01	minor_base=T	minor_cov=1/1	new_cov=43/31	polymorphism_frequency=9.737e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/1	total_cov=44/32
RA	92	.	AE015451	3845703	1	.	G	consensus_score=108.0	frequency=1	major_base=G	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	93	.	AE015451	3951159	0	T	C	consensus_score=77.6	frequency=1	major_base=C	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	94	.	AE015451	3951161	0	A	T	consensus_score=75.9	frequency=1	major_base=T	major_cov=17/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/5
RA	95	.	AE015451	3989364	0	G	C	bias_e_value=73.7793	bias_p_value=1.19348e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=7.93154e-07	frequency=2.281e-01	ks_quality_p_value=1	major_base=G	major_cov=7/37	major_frequency=7.719e-01	minor_base=C	minor_cov=12/1	new_cov=12/1	polymorphism_frequency=2.281e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=7/37	total_cov=19/38
RA	96	.	AE015451	4025384	0	T	C	consensus_score=292.6	frequency=1	major_base=C	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	97	.	AE015451	4169472	0	T	C	bias_e_value=331742	bias_p_value=0.0536637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.7	fisher_strand_p_value=0.012209	frequency=2.727e-01	ks_quality_p_value=0.776837	major_base=T	major_cov=12/12	major_frequency=7.273e-01	minor_base=C	minor_cov=9/0	new_cov=9/0	polymorphism_frequency=2.727e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=12/12	total_cov=21/12
RA	98	.	AE015451	4169474	1	.	A	bias_e_value=820366	bias_p_value=0.132705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.3	fisher_strand_p_value=0.0298655	frequency=2.424e-01	ks_quality_p_value=0.980793	major_base=.	major_cov=13/12	major_frequency=7.576e-01	minor_base=A	minor_cov=8/0	new_cov=8/0	polymorphism_frequency=2.424e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=13/12	total_cov=21/12
RA	99	.	AE015451	4236779	0	T	G	consensus_score=72.6	deleted=1	frequency=1	major_base=G	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	100	.	AE015451	4348705	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.7	fisher_strand_p_value=1	frequency=5.137e-01	ks_quality_p_value=1	major_base=G	major_cov=36/39	major_frequency=5.137e-01	minor_base=A	minor_cov=35/36	new_cov=36/39	polymorphism_frequency=5.137e-01	polymorphism_score=211.3	prediction=polymorphism	ref_cov=35/36	total_cov=71/75
RA	101	.	AE015451	4586030	0	C	T	consensus_score=68.1	frequency=1	major_base=T	major_cov=6/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/14
RA	102	.	AE015451	4586031	0	T	C	consensus_score=72.0	frequency=1	major_base=C	major_cov=6/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/14
RA	103	.	AE015451	4586033	1	.	G	consensus_score=71.5	frequency=1	major_base=G	major_cov=6/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/14
RA	104	.	AE015451	4586056	1	.	C	consensus_score=86.7	frequency=1	major_base=C	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	105	.	AE015451	4714831	0	C	A	consensus_score=281.6	frequency=1	major_base=A	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	106	.	AE015451	4740805	0	T	.	consensus_score=145.9	frequency=1	major_base=.	major_cov=15/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/16
RA	107	.	AE015451	4740816	0	T	G	consensus_score=121.2	frequency=1	major_base=G	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	108	.	AE015451	4740819	0	T	C	consensus_score=125.8	frequency=1	major_base=C	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	109	.	AE015451	4740820	0	G	T	consensus_score=118.5	frequency=1	major_base=T	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	110	.	AE015451	4741228	1	.	C	bias_e_value=6181870	bias_p_value=0.999999	consensus_score=248.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998643	major_base=C	major_cov=32/33	major_frequency=9.559e-01	minor_base=.	minor_cov=2/1	new_cov=32/33	polymorphism_frequency=9.559e-01	polymorphism_score=3.9	prediction=consensus	ref_cov=2/1	total_cov=34/34
RA	111	.	AE015451	4741230	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=242.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/33	major_frequency=9.706e-01	minor_base=A	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	112	.	AE015451	4741232	0	C	T	bias_e_value=6181870	bias_p_value=1	consensus_score=232.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/33	major_frequency=9.706e-01	minor_base=C	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	113	.	AE015451	4741235	0	C	T	bias_e_value=6181870	bias_p_value=1	consensus_score=236.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/33	major_frequency=9.706e-01	minor_base=C	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	114	.	AE015451	4741238	0	C	G	bias_e_value=6181870	bias_p_value=1	consensus_score=251.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/33	major_frequency=9.706e-01	minor_base=C	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	115	.	AE015451	4741240	0	A	C	bias_e_value=5945590	bias_p_value=0.961779	consensus_score=253.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.736575	major_base=C	major_cov=33/33	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=34/34
RA	116	.	AE015451	4741241	0	C	T	bias_e_value=6181830	bias_p_value=0.999994	consensus_score=231.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996441	major_base=T	major_cov=33/33	major_frequency=9.706e-01	minor_base=C	minor_cov=1/1	new_cov=33/33	polymorphism_frequency=9.706e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=1/1	total_cov=34/34
RA	117	.	AE015451	4741245	0	A	.	bias_e_value=6160260	bias_p_value=0.996504	consensus_score=318.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917557	major_base=.	major_cov=33/34	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	118	.	AE015451	4741254	1	.	T	bias_e_value=5809490	bias_p_value=0.939761	consensus_score=243.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.673624	major_base=T	major_cov=34/33	major_frequency=9.853e-01	minor_base=.	minor_cov=0/1	new_cov=34/33	polymorphism_frequency=9.853e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/1	total_cov=34/34
RA	119	.	AE015451	4741258	0	A	G	consensus_score=256.8	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	120	.	AE015451	4741261	0	A	.	consensus_score=328.7	frequency=1	major_base=.	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	121	.	AE015451	4741263	0	A	C	consensus_score=259.6	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	122	.	AE015451	4741272	0	A	G	consensus_score=259.9	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	123	.	AE015451	4741274	0	A	C	consensus_score=258.3	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	124	.	AE015451	4741276	0	G	C	consensus_score=258.1	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	125	.	AE015451	4741278	0	C	T	consensus_score=248.9	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	126	.	AE015451	4741283	1	.	T	bias_e_value=6181870	bias_p_value=1	consensus_score=245.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/34	major_frequency=9.853e-01	minor_base=.	minor_cov=1/0	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=34/34
RA	127	.	AE015451	4741289	0	C	G	bias_e_value=6181870	bias_p_value=1	consensus_score=249.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=33/34	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=33/34	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/34
RA	128	.	AE015451	4741292	0	C	T	consensus_score=241.9	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	129	.	AE015451	4741294	0	C	G	consensus_score=260.6	frequency=1	major_base=G	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	130	.	AE015451	4741296	0	A	C	consensus_score=258.1	frequency=1	major_base=C	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	131	.	AE015451	4741298	0	C	T	consensus_score=245.3	frequency=1	major_base=T	major_cov=34/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	132	.	AE015451	4808167	0	A	.	bias_e_value=4754810	bias_p_value=0.769154	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=1	frequency=3.125e-01	ks_quality_p_value=0.40289	major_base=A	major_cov=5/6	major_frequency=6.875e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=3.125e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=5/6	total_cov=8/8
RA	133	.	AE015451	4808168	0	G	.	bias_e_value=6044470	bias_p_value=0.977772	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.1	fisher_strand_p_value=1	frequency=3.125e-01	ks_quality_p_value=0.796703	major_base=G	major_cov=5/6	major_frequency=6.875e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=3.125e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=5/6	total_cov=8/8
RA	134	.	AE015451	4808169	0	C	.	bias_e_value=4853520	bias_p_value=0.785121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.7	fisher_strand_p_value=1	frequency=3.846e-01	ks_quality_p_value=0.42089	major_base=C	major_cov=4/4	major_frequency=6.154e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=3.846e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=4/4	total_cov=7/6
RA	135	.	AE015451	4808170	0	G	.	bias_e_value=4853520	bias_p_value=0.785121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=1	frequency=3.846e-01	ks_quality_p_value=0.42089	major_base=G	major_cov=4/4	major_frequency=6.154e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=3.846e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=4/4	total_cov=7/6
RA	136	.	AE015451	4808171	0	C	.	bias_e_value=6117690	bias_p_value=0.989618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.3	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.859405	major_base=C	major_cov=3/3	major_frequency=5.455e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=4.545e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=3/3	total_cov=6/5
RA	137	.	AE015451	4808172	0	C	.	bias_e_value=5415930	bias_p_value=0.876099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.8	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.545496	major_base=C	major_cov=3/3	major_frequency=5.455e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=4.545e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=3/3	total_cov=6/5
RA	138	.	AE015451	4808173	0	G	.	bias_e_value=5415930	bias_p_value=0.876099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.5	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.545496	major_base=G	major_cov=3/3	major_frequency=5.455e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=4.545e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=3/3	total_cov=6/5
RA	139	.	AE015451	4808174	0	C	.	bias_e_value=5415930	bias_p_value=0.876099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.545496	major_base=C	major_cov=3/3	major_frequency=5.455e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=4.545e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=3/3	total_cov=6/5
RA	140	.	AE015451	4808175	0	C	.	bias_e_value=5415930	bias_p_value=0.876099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.9	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.545496	major_base=C	major_cov=3/3	major_frequency=5.455e-01	minor_base=.	minor_cov=3/2	new_cov=3/2	polymorphism_frequency=4.545e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=3/3	total_cov=6/5
RA	141	.	AE015451	4808179	0	G	.	bias_e_value=5946960	bias_p_value=0.962	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.0	fisher_strand_p_value=1	frequency=5.833e-01	ks_quality_p_value=0.737299	major_base=.	major_cov=4/3	major_frequency=5.833e-01	minor_base=G	minor_cov=3/2	new_cov=4/3	polymorphism_frequency=5.833e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=3/2	total_cov=7/5
RA	142	.	AE015451	4808180	0	A	.	bias_e_value=4831850	bias_p_value=0.781616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=1	frequency=4.375e-01	ks_quality_p_value=0.416862	major_base=A	major_cov=4/5	major_frequency=5.625e-01	minor_base=.	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=4.375e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=4/5	total_cov=8/8
RA	143	.	AE015451	4889556	0	G	A	consensus_score=133.4	frequency=1	major_base=A	major_cov=18/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/20
RA	144	.	AE015451	5674750	1	.	G	consensus_score=143.0	frequency=1	major_base=G	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	145	.	AE015451	5674753	0	G	C	bias_e_value=6181870	bias_p_value=1	consensus_score=144.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=17/23	major_frequency=9.756e-01	minor_base=A	minor_cov=0/1	new_cov=17/23	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	146	.	AE015451	6013885	0	T	C	consensus_score=103.5	frequency=1	major_base=C	major_cov=18/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/11
MC	147	.	AE015451	1164572	1165401	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=71
MC	148	.	AE015451	1551214	1552909	0	0	left_inside_cov=33	left_outside_cov=35	right_inside_cov=33	right_outside_cov=35
MC	149	.	AE015451	1644845	1647416	0	0	left_inside_cov=34	left_outside_cov=35	right_inside_cov=34	right_outside_cov=36
MC	150	.	AE015451	1709370	1712009	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=0	right_outside_cov=54
MC	151	.	AE015451	2032505	2034184	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=0	right_outside_cov=75
MC	152	.	AE015451	3276909	3278192	0	0	left_inside_cov=34	left_outside_cov=35	right_inside_cov=34	right_outside_cov=36
MC	153	.	AE015451	4236728	4239334	0	0	left_inside_cov=33	left_outside_cov=35	right_inside_cov=33	right_outside_cov=35
MC	154	.	AE015451	4892114	4893525	0	0	left_inside_cov=0	left_outside_cov=55	right_inside_cov=0	right_outside_cov=53
MC	155	.	AE015451	5280859	5282499	0	0	left_inside_cov=33	left_outside_cov=37	right_inside_cov=34	right_outside_cov=35
MC	156	.	AE015451	5342745	5344425	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=0	right_outside_cov=53
JC	157	.	AE015451	1	1	AE015451	6181873	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=54	coverage_plus=50	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=276	key=AE015451__1__1__AE015451__6181873__-1__0____301__301__0__0	max_left=298	max_left_minus=298	max_left_plus=293	max_min_left=146	max_min_left_minus=142	max_min_left_plus=146	max_min_right=144	max_min_right_minus=144	max_min_right_plus=143	max_pos_hash_score=552	max_right=299	max_right_minus=299	max_right_plus=293	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=105	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104
JC	158	.	AE015451	215580	1	AE015451	2179377	-1	0	alignment_overlap=2	coverage_minus=34	coverage_plus=37	flanking_left=301	flanking_right=301	frequency=4.382e-01	junction_possible_overlap_registers=274	key=AE015451__215578__1__AE015451__2179377__-1__2____301__301__1__0	max_left=292	max_left_minus=277	max_left_plus=292	max_min_left=143	max_min_left_minus=143	max_min_left_plus=140	max_min_right=146	max_min_right_minus=146	max_min_right_plus=116	max_pos_hash_score=548	max_right=297	max_right_minus=295	max_right_plus=297	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.84	new_junction_read_count=72	polymorphism_frequency=4.382e-01	pos_hash_score=67	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=2	side_2_possible_overlap_registers=276	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=71
JC	159	.	AE015451	215584	-1	AE015451	2177703	1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=25	flanking_left=301	flanking_right=301	frequency=5.275e-01	junction_possible_overlap_registers=274	key=AE015451__215584__-1__AE015451__2177701__1__2____301__301__0__0	max_left=285	max_left_minus=267	max_left_plus=285	max_min_left=145	max_min_left_minus=122	max_min_left_plus=145	max_min_right=140	max_min_right_minus=140	max_min_right_plus=135	max_pos_hash_score=548	max_right=273	max_right_minus=270	max_right_plus=273	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.56	new_junction_read_count=48	polymorphism_frequency=5.275e-01	pos_hash_score=47	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=48
JC	160	.	AE015451	311678	1	AE015451	2881656	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.956e-02	junction_possible_overlap_registers=276	key=AE015451__311678__1__AE015451__2881656__1__0____301__301__0__0	max_left=153	max_left_minus=153	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=127	max_min_right_minus=127	max_min_right_plus=0	max_pos_hash_score=552	max_right=240	max_right_minus=127	max_right_plus=240	neg_log10_pos_hash_p_value=12.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.956e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	161	.	AE015451	337798	-1	AE015451	337861	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=5.943e-02	junction_possible_overlap_registers=270	key=AE015451__337798__-1__AE015451__337855__1__6____301__301__0__0	max_left=203	max_left_minus=203	max_left_plus=196	max_min_left=3	max_min_left_minus=3	max_min_left_plus=0	max_min_right=98	max_min_right_minus=89	max_min_right_plus=98	max_pos_hash_score=540	max_right=229	max_right_minus=229	max_right_plus=98	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.943e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=6	side_1_possible_overlap_registers=276	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	162	.	AE015451	401308	-1	AE015451	3968949	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.790e-02	junction_possible_overlap_registers=269	key=AE015451__401308__-1__AE015451__3968942__1__7____301__301__0__0	max_left=103	max_left_minus=103	max_left_plus=103	max_min_left=103	max_min_left_minus=103	max_min_left_plus=103	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=538	max_right=250	max_right_minus=200	max_right_plus=250	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.790e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4
JC	163	.	AE015451	550100	1	AE015451	550096	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.364e-02	junction_possible_overlap_registers=263	key=AE015451__550087__1__AE015451__550096__-1__13____301__301__1__0	max_left=272	max_left_minus=178	max_left_plus=272	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=85	max_min_right_minus=85	max_min_right_plus=14	max_pos_hash_score=526	max_right=180	max_right_minus=85	max_right_plus=180	neg_log10_pos_hash_p_value=12.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.364e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=13	side_2_possible_overlap_registers=276	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=3
JC	164	.	AE015451	610901	1	AE015451	812297	-1	0	alignment_overlap=18	coverage_minus=39	coverage_plus=34	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=258	key=AE015451__610883__1__AE015451__812297__-1__18____301__301__1__0	max_left=245	max_left_minus=245	max_left_plus=240	max_min_left=128	max_min_left_minus=128	max_min_left_plus=123	max_min_right=137	max_min_right_minus=137	max_min_right_plus=131	max_pos_hash_score=516	max_right=271	max_right_minus=263	max_right_plus=271	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=18	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	165	.	AE015451	812296	1	AE015451	2436567	-1	0	alignment_overlap=7	coverage_minus=49	coverage_plus=56	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=269	key=AE015451__812296__1__AE015451__2436574__-1__7____301__301__0__1	max_left=286	max_left_minus=284	max_left_plus=286	max_min_left=140	max_min_left_minus=124	max_min_left_plus=140	max_min_right=142	max_min_right_minus=135	max_min_right_plus=142	max_pos_hash_score=538	max_right=283	max_right_minus=283	max_right_plus=273	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.37	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=105
JC	166	.	AE015451	1013162	-1	AE015451	1013281	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.155e-01	junction_possible_overlap_registers=269	key=AE015451__1013162__-1__AE015451__1013274__1__7____301__301__0__0	max_left=139	max_left_minus=139	max_left_plus=139	max_min_left=139	max_min_left_minus=139	max_min_left_plus=139	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=538	max_right=152	max_right_minus=152	max_right_plus=152	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=1.155e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.39	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=4
JC	167	.	AE015451	1164571	-1	AE015451	1165402	1	-3	alignment_overlap=-3	coverage_minus=34	coverage_plus=37	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=273	key=AE015451__1164571__-1__AE015451__1165402__1__-3__TCA__301__301__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=144	max_min_left_minus=134	max_min_left_plus=144	max_min_right=142	max_min_right_minus=142	max_min_right_plus=140	max_pos_hash_score=546	max_right=294	max_right_minus=294	max_right_plus=277	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.83	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=TCA
JC	168	.	AE015451	1403579	-1	AE015451	1403644	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=9.941e-02	junction_possible_overlap_registers=272	key=AE015451__1403579__-1__AE015451__1403640__1__4____301__301__0__0	max_left=220	max_left_minus=220	max_left_plus=220	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=76	max_min_right_minus=76	max_min_right_plus=64	max_pos_hash_score=544	max_right=162	max_right_minus=76	max_right_plus=162	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=9.941e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=4	side_1_possible_overlap_registers=276	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=272	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	169	.	AE015451	1531731	-1	AE015451	1531839	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=4	flanking_left=301	flanking_right=301	frequency=1.449e-01	junction_possible_overlap_registers=269	key=AE015451__1531731__-1__AE015451__1531832__1__7____301__301__0__0	max_left=229	max_left_minus=229	max_left_plus=219	max_min_left=95	max_min_left_minus=95	max_min_left_plus=33	max_min_right=94	max_min_right_minus=63	max_min_right_plus=94	max_pos_hash_score=538	max_right=236	max_right_minus=197	max_right_plus=236	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.449e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=8
JC	170	.	AE015451	1623469	-1	AE015451	4550877	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.844e-02	junction_possible_overlap_registers=276	key=AE015451__1623469__-1__AE015451__4550877__-1__0____301__301__0__0	max_left=211	max_left_minus=211	max_left_plus=83	max_min_left=83	max_min_left_minus=0	max_min_left_plus=83	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=552	max_right=292	max_right_minus=90	max_right_plus=292	neg_log10_pos_hash_p_value=12.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.844e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=3
JC	171	.	AE015451	1709369	-1	AE015451	1712010	1	-7	alignment_overlap=-7	coverage_minus=30	coverage_plus=22	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=269	key=AE015451__1709369__-1__AE015451__1712010__1__-7__CGGCCGC__301__301__0__0	max_left=273	max_left_minus=273	max_left_plus=272	max_min_left=133	max_min_left_minus=133	max_min_left_plus=128	max_min_right=130	max_min_right_minus=124	max_min_right_plus=130	max_pos_hash_score=538	max_right=290	max_right_minus=283	max_right_plus=290	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.62	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=CGGCCGC
JC	172	.	AE015451	1731167	-1	AE015451	1731271	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=4	flanking_left=301	flanking_right=301	frequency=1.631e-01	junction_possible_overlap_registers=269	key=AE015451__1731167__-1__AE015451__1731264__1__7____301__301__0__0	max_left=259	max_left_minus=259	max_left_plus=251	max_min_left=115	max_min_left_minus=115	max_min_left_plus=115	max_min_right=54	max_min_right_minus=40	max_min_right_plus=54	max_pos_hash_score=538	max_right=278	max_right_minus=272	max_right_plus=278	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=1.631e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=8
JC	173	.	AE015451	1737987	1	AE015451	1777401	-1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.049e-02	junction_possible_overlap_registers=259	key=AE015451__1737987__1__AE015451__1777418__-1__17____301__301__0__0	max_left=193	max_left_minus=193	max_left_plus=178	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=105	max_min_right_minus=90	max_min_right_plus=105	max_pos_hash_score=518	max_right=208	max_right_minus=90	max_right_plus=208	neg_log10_pos_hash_p_value=12.4	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.049e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=17	side_1_possible_overlap_registers=276	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=259	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=3
JC	174	.	AE015451	1780066	-1	AE015451	1780129	1	0	alignment_overlap=7	coverage_minus=7	coverage_plus=8	flanking_left=301	flanking_right=301	frequency=3.189e-01	junction_possible_overlap_registers=269	key=AE015451__1780066__-1__AE015451__1780122__1__7____301__301__0__0	max_left=291	max_left_minus=291	max_left_plus=272	max_min_left=137	max_min_left_minus=49	max_min_left_plus=137	max_min_right=85	max_min_right_minus=85	max_min_right_plus=76	max_pos_hash_score=538	max_right=270	max_right_minus=268	max_right_plus=270	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=3.189e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=15
JC	175	.	AE015451	2032504	-1	AE015451	2034185	1	-8	alignment_overlap=-8	coverage_minus=35	coverage_plus=36	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=268	key=AE015451__2032504__-1__AE015451__2034185__1__-8__GCGGCCGC__301__301__0__0	max_left=280	max_left_minus=272	max_left_plus=280	max_min_left=141	max_min_left_minus=141	max_min_left_plus=141	max_min_right=144	max_min_right_minus=144	max_min_right_plus=142	max_pos_hash_score=536	max_right=285	max_right_minus=285	max_right_plus=284	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.85	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=GCGGCCGC
JC	176	.	AE015451	2258114	1	AE015451	4022818	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=8.063e-02	junction_possible_overlap_registers=266	key=AE015451__2258114__1__AE015451__4022808__1__10____301__301__0__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=32	max_min_left_minus=32	max_min_left_plus=32	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=532	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=8.063e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=10	side_1_possible_overlap_registers=276	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	177	.	AE015451	2282748	-1	AE015451	2282815	1	0	alignment_overlap=6	coverage_minus=8	coverage_plus=5	flanking_left=301	flanking_right=301	frequency=3.492e-01	junction_possible_overlap_registers=270	key=AE015451__2282748__-1__AE015451__2282809__1__6____301__301__0__0	max_left=200	max_left_minus=200	max_left_plus=152	max_min_left=41	max_min_left_minus=41	max_min_left_plus=41	max_min_right=104	max_min_right_minus=104	max_min_right_plus=104	max_pos_hash_score=540	max_right=289	max_right_minus=289	max_right_plus=249	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=3.492e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=6	side_1_possible_overlap_registers=276	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.28	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=13
JC	178	.	AE015451	2472115	-1	AE015451	2472313	1	0	alignment_overlap=7	coverage_minus=14	coverage_plus=15	flanking_left=301	flanking_right=301	frequency=4.587e-01	junction_possible_overlap_registers=269	key=AE015451__2472115__-1__AE015451__2472306__1__7____301__301__0__0	max_left=269	max_left_minus=269	max_left_plus=269	max_min_left=116	max_min_left_minus=116	max_min_left_plus=116	max_min_right=124	max_min_right_minus=124	max_min_right_plus=124	max_pos_hash_score=538	max_right=279	max_right_minus=274	max_right_plus=279	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.34	new_junction_read_count=29	polymorphism_frequency=4.587e-01	pos_hash_score=29	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.25	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=29
JC	179	.	AE015451	2478409	1	AE015451	2478405	-1	0	alignment_overlap=26	coverage_minus=2	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=7.944e-02	junction_possible_overlap_registers=250	key=AE015451__2478409__1__AE015451__2478431__-1__26____301__301__0__0	max_left=215	max_left_minus=161	max_left_plus=215	max_min_left=89	max_min_left_minus=81	max_min_left_plus=89	max_min_right=60	max_min_right_minus=41	max_min_right_plus=60	max_pos_hash_score=500	max_right=195	max_right_minus=191	max_right_plus=195	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.944e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=26	side_1_possible_overlap_registers=276	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=250	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	180	.	AE015451	2530750	1	AE015451	4022818	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=9.546e-02	junction_possible_overlap_registers=266	key=AE015451__2530750__1__AE015451__4022808__1__10____301__301__0__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=32	max_min_left_minus=32	max_min_left_plus=32	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=532	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=9.546e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.38	side_1_overlap=10	side_1_possible_overlap_registers=276	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	181	.	AE015451	2615000	-1	AE015451	4519861	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.865e-02	junction_possible_overlap_registers=276	key=AE015451__2615000__-1__AE015451__4519861__-1__0____301__301__0__0	max_left=284	max_left_minus=284	max_left_plus=105	max_min_left=135	max_min_left_minus=135	max_min_left_plus=105	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=552	max_right=194	max_right_minus=165	max_right_plus=194	neg_log10_pos_hash_p_value=12.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.865e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=3
JC	182	.	AE015451	2957080	-1	AE015451	2957165	1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=5	flanking_left=301	flanking_right=301	frequency=1.462e-01	junction_possible_overlap_registers=271	key=AE015451__2957080__-1__AE015451__2957160__1__5____301__301__0__0	max_left=211	max_left_minus=211	max_left_plus=211	max_min_left=124	max_min_left_minus=80	max_min_left_plus=124	max_min_right=106	max_min_right_minus=106	max_min_right_plus=89	max_pos_hash_score=542	max_right=222	max_right_minus=214	max_right_plus=222	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.462e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=5	side_1_possible_overlap_registers=276	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=271	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=10
JC	183	.	AE015451	2958771	-1	AE015451	2958833	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=5.889e-02	junction_possible_overlap_registers=270	key=AE015451__2958771__-1__AE015451__2958827__1__6____301__301__0__0	max_left=122	max_left_minus=122	max_left_plus=30	max_min_left=122	max_min_left_minus=122	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=540	max_right=205	max_right_minus=205	max_right_plus=193	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.889e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=6	side_1_possible_overlap_registers=276	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	184	.	AE015451	2958779	-1	AE015451	2958841	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=5.830e-02	junction_possible_overlap_registers=270	key=AE015451__2958779__-1__AE015451__2958835__1__6____301__301__0__0	max_left=195	max_left_minus=195	max_left_plus=77	max_min_left=77	max_min_left_minus=17	max_min_left_plus=77	max_min_right=99	max_min_right_minus=99	max_min_right_plus=0	max_pos_hash_score=540	max_right=268	max_right_minus=268	max_right_plus=122	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.830e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=6	side_1_possible_overlap_registers=276	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	185	.	AE015451	2991238	-1	AE015451	4415292	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.327e-02	junction_possible_overlap_registers=267	key=AE015451__2991238__-1__AE015451__4415283__1__9____301__301__0__0	max_left=225	max_left_minus=225	max_left_plus=198	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=93	max_min_right_minus=65	max_min_right_plus=93	max_pos_hash_score=534	max_right=93	max_right_minus=65	max_right_plus=93	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.327e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=9	side_1_possible_overlap_registers=276	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=267	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	186	.	AE015451	3968886	-1	AE015451	3968949	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.762e-02	junction_possible_overlap_registers=269	key=AE015451__3968886__-1__AE015451__3968942__1__7____301__301__0__0	max_left=103	max_left_minus=103	max_left_plus=103	max_min_left=103	max_min_left_minus=103	max_min_left_plus=103	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=538	max_right=250	max_right_minus=200	max_right_plus=250	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.762e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=4
JC	187	.	AE015451	4022317	-1	AE015451	4022818	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=6.437e-02	junction_possible_overlap_registers=266	key=AE015451__4022317__-1__AE015451__4022808__1__10____301__301__0__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=32	max_min_left_minus=32	max_min_left_plus=32	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=532	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.437e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=10	side_1_possible_overlap_registers=276	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	188	.	AE015451	4022808	1	AE015451	4908026	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=6.765e-02	junction_possible_overlap_registers=266	key=AE015451__4022808__1__AE015451__4908036__-1__10____301__301__0__0	max_left=81	max_left_minus=81	max_left_plus=81	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=32	max_min_right_plus=32	max_pos_hash_score=532	max_right=32	max_right_minus=32	max_right_plus=32	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.765e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=10	side_1_possible_overlap_registers=276	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4
JC	189	.	AE015451	4808174	-1	AE015451	4808189	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=6	flanking_left=301	flanking_right=301	frequency=4.822e-01	junction_possible_overlap_registers=268	key=AE015451__4808174__-1__AE015451__4808181__1__8____301__301__0__0	max_left=217	max_left_minus=201	max_left_plus=217	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=536	max_right=202	max_right_minus=202	max_right_plus=202	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.13	new_junction_read_count=11	polymorphism_frequency=4.822e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=8	side_1_possible_overlap_registers=276	side_1_read_count=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.13	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=11
JC	190	.	AE015451	4808174	1	AE015451	5988935	-1	0	alignment_overlap=35	coverage_minus=14	coverage_plus=11	flanking_left=301	flanking_right=301	frequency=5.796e-01	junction_possible_overlap_registers=241	key=AE015451__4808174__1__AE015451__5988970__-1__35____301__301__0__0	max_left=260	max_left_minus=244	max_left_plus=260	max_min_left=114	max_min_left_minus=114	max_min_left_plus=108	max_min_right=85	max_min_right_minus=85	max_min_right_plus=69	max_pos_hash_score=482	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.41	new_junction_read_count=31	polymorphism_frequency=5.796e-01	pos_hash_score=24	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=35	side_1_possible_overlap_registers=276	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=25
JC	191	.	AE015451	4808176	-1	AE015451	4808280	1	0	alignment_overlap=8	coverage_minus=4	coverage_plus=4	flanking_left=301	flanking_right=301	frequency=2.303e-01	junction_possible_overlap_registers=268	key=AE015451__4808176__-1__AE015451__4808272__1__8____301__301__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=29	max_min_left_minus=29	max_min_left_plus=17	max_min_right=87	max_min_right_minus=87	max_min_right_plus=87	max_pos_hash_score=536	max_right=275	max_right_minus=260	max_right_plus=275	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.10	new_junction_read_count=8	polymorphism_frequency=2.303e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.21	side_1_overlap=8	side_1_possible_overlap_registers=276	side_1_read_count=18	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=8
JC	192	.	AE015451	4808179	-1	AE015451	4808194	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=4	flanking_left=301	flanking_right=301	frequency=3.677e-01	junction_possible_overlap_registers=275	key=AE015451__4808179__-1__AE015451__4808193__1__1____301__301__0__0	max_left=293	max_left_minus=258	max_left_plus=293	max_min_left=13	max_min_left_minus=13	max_min_left_plus=13	max_min_right=64	max_min_right_minus=64	max_min_right_plus=64	max_pos_hash_score=550	max_right=297	max_right_minus=297	max_right_plus=69	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=3.677e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=1	side_1_possible_overlap_registers=276	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.20	side_2_overlap=0	side_2_possible_overlap_registers=275	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=9
JC	193	.	AE015451	4808179	-1	AE015451	5988765	1	0	alignment_overlap=12	coverage_minus=15	coverage_plus=14	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=264	key=AE015451__4808179__-1__AE015451__5988753__1__12____301__301__0__0	max_left=282	max_left_minus=262	max_left_plus=282	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=528	max_right=164	max_right_minus=119	max_right_plus=164	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.42	new_junction_read_count=35	polymorphism_frequency=8.206e-01	pos_hash_score=26	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=12	side_1_possible_overlap_registers=276	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=264	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	194	.	AE015451	4892113	-1	AE015451	4893526	1	-8	alignment_overlap=-8	coverage_minus=23	coverage_plus=28	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=268	key=AE015451__4892113__-1__AE015451__4893526__1__-8__GCGGCCGC__301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=283	max_min_left=121	max_min_left_minus=68	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=99	max_pos_hash_score=536	max_right=282	max_right_minus=247	max_right_plus=282	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.61	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=GCGGCCGC
JC	195	.	AE015451	4892113	-1	AE015451	4893627	1	-5	alignment_overlap=-5	coverage_minus=10	coverage_plus=11	flanking_left=301	flanking_right=301	frequency=6.311e-01	junction_possible_overlap_registers=271	key=AE015451__4892113__-1__AE015451__4893627__1__-5__GCGGC__301__301__0__0	max_left=237	max_left_minus=237	max_left_plus=237	max_min_left=123	max_min_left_minus=123	max_min_left_plus=69	max_min_right=139	max_min_right_minus=121	max_min_right_plus=139	max_pos_hash_score=542	max_right=289	max_right_minus=261	max_right_plus=289	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.25	new_junction_read_count=21	polymorphism_frequency=6.311e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=21	unique_read_sequence=GCGGC
JC	196	.	AE015451	4896440	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=46	coverage_plus=44	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=258	key=AE015451__4896440__1__AE015451__5756790__1__18____301__301__0__1	max_left=271	max_left_minus=254	max_left_plus=271	max_min_left=138	max_min_left_minus=135	max_min_left_plus=138	max_min_right=137	max_min_right_minus=130	max_min_right_plus=137	max_pos_hash_score=516	max_right=269	max_right_minus=250	max_right_plus=269	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.45	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	197	.	AE015451	4896441	-1	AE015451	5220211	-1	0	alignment_overlap=7	coverage_minus=41	coverage_plus=45	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=269	key=AE015451__4896441__-1__AE015451__5220218__-1__7____301__301__0__1	max_left=287	max_left_minus=275	max_left_plus=287	max_min_left=144	max_min_left_minus=127	max_min_left_plus=144	max_min_right=143	max_min_right_minus=141	max_min_right_plus=143	max_pos_hash_score=538	max_right=282	max_right_minus=264	max_right_plus=282	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86
JC	198	.	AE015451	4980585	-1	AE015451	4980586	1	-3	alignment_overlap=-3	coverage_minus=41	coverage_plus=46	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=273	key=AE015451__4980585__-1__AE015451__4980586__1__-3__GGC__301__301__0__0	max_left=267	max_left_minus=265	max_left_plus=267	max_min_left=143	max_min_left_minus=143	max_min_left_plus=129	max_min_right=140	max_min_right_minus=140	max_min_right_plus=137	max_pos_hash_score=546	max_right=291	max_right_minus=275	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=87	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87	unique_read_sequence=GGC
JC	199	.	AE015451	5201567	-1	AE015451	5201666	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=6	flanking_left=301	flanking_right=301	frequency=2.543e-01	junction_possible_overlap_registers=273	key=AE015451__5201567__-1__AE015451__5201663__1__3____301__301__0__0	max_left=286	max_left_minus=286	max_left_plus=265	max_min_left=103	max_min_left_minus=101	max_min_left_plus=103	max_min_right=96	max_min_right_minus=96	max_min_right_plus=55	max_pos_hash_score=546	max_right=172	max_right_minus=137	max_right_plus=172	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=2.543e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.38	side_1_overlap=3	side_1_possible_overlap_registers=276	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=273	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=9
JC	200	.	AE015451	5342744	-1	AE015451	5344426	1	-8	alignment_overlap=-8	coverage_minus=22	coverage_plus=30	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=268	key=AE015451__5342744__-1__AE015451__5344426__1__-8__GCGGCCGC__301__301__0__0	max_left=280	max_left_minus=260	max_left_plus=280	max_min_left=142	max_min_left_minus=137	max_min_left_plus=142	max_min_right=125	max_min_right_minus=125	max_min_right_plus=112	max_pos_hash_score=536	max_right=250	max_right_minus=242	max_right_plus=250	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.62	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=GCGGCCGC
JC	201	.	AE015451	5513317	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=29	coverage_plus=27	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=258	key=AE015451__5513317__1__AE015451__5756790__1__18____301__301__0__1	max_left=276	max_left_minus=276	max_left_plus=252	max_min_left=139	max_min_left_minus=136	max_min_left_plus=139	max_min_right=132	max_min_right_minus=122	max_min_right_plus=132	max_pos_hash_score=516	max_right=266	max_right_minus=266	max_right_plus=261	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.69	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	202	.	AE015451	5513318	-1	AE015451	5758121	-1	0	alignment_overlap=7	coverage_minus=36	coverage_plus=41	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=269	key=AE015451__5513318__-1__AE015451__5758128__-1__7____301__301__0__1	max_left=286	max_left_minus=277	max_left_plus=286	max_min_left=142	max_min_left_minus=142	max_min_left_plus=141	max_min_right=144	max_min_right_minus=144	max_min_right_plus=144	max_pos_hash_score=538	max_right=264	max_right_minus=256	max_right_plus=264	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.93	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=77
JC	203	.	AE015451	5555608	-1	AE015451	5555609	1	-3	alignment_overlap=-3	coverage_minus=32	coverage_plus=42	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=273	key=AE015451__5555608__-1__AE015451__5555609__1__-3__GCC__301__301__0__0	max_left=288	max_left_minus=288	max_left_plus=288	max_min_left=148	max_min_left_minus=141	max_min_left_plus=148	max_min_right=146	max_min_right_minus=146	max_min_right_plus=124	max_pos_hash_score=546	max_right=282	max_right_minus=282	max_right_plus=267	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.88	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74	unique_read_sequence=GCC
JC	204	.	AE015451	5681415	-1	AE015451	5681416	1	-4	alignment_overlap=-4	coverage_minus=30	coverage_plus=30	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=272	key=AE015451__5681415__-1__AE015451__5681416__1__-4__CGGG__301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=272	max_min_left=141	max_min_left_minus=118	max_min_left_plus=141	max_min_right=138	max_min_right_minus=138	max_min_right_plus=124	max_pos_hash_score=544	max_right=290	max_right_minus=290	max_right_plus=280	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.70	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=276	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60	unique_read_sequence=CGGG
JC	205	.	AE015451	5696567	-1	AE015451	5696629	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=24	flanking_left=301	flanking_right=301	frequency=3.583e-01	junction_possible_overlap_registers=268	key=AE015451__5696567__-1__AE015451__5696621__1__8____301__301__0__0	max_left=267	max_left_minus=103	max_left_plus=267	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=75	max_min_right_minus=42	max_min_right_plus=75	max_pos_hash_score=536	max_right=237	max_right_minus=42	max_right_plus=237	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.30	new_junction_read_count=25	polymorphism_frequency=3.583e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=8	side_1_possible_overlap_registers=276	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=25
JC	206	.	AE015451	5984436	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=38	coverage_plus=37	flanking_left=301	flanking_right=301	frequency=6.356e-01	junction_possible_overlap_registers=258	key=AE015451__5984436__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=272	max_left_minus=236	max_left_plus=272	max_min_left=135	max_min_left_minus=135	max_min_left_plus=107	max_min_right=141	max_min_right_minus=127	max_min_right_plus=141	max_pos_hash_score=516	max_right=266	max_right_minus=266	max_right_plus=263	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=75	polymorphism_frequency=6.356e-01	pos_hash_score=69	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=18	side_1_possible_overlap_registers=276	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=75
JC	207	.	AE015451	5988787	1	AE015451	6037870	1	0	alignment_overlap=7	coverage_minus=42	coverage_plus=56	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=269	key=AE015451__5988787__1__AE015451__6037863__1__7____301__301__0__1	max_left=289	max_left_minus=281	max_left_plus=289	max_min_left=138	max_min_left_minus=137	max_min_left_plus=138	max_min_right=144	max_min_right_minus=141	max_min_right_plus=144	max_pos_hash_score=538	max_right=290	max_right_minus=275	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=98	polymorphism_frequency=9.902e-01	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=7	side_1_possible_overlap_registers=276	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=98
JC	208	.	AE015451	5988788	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=38	coverage_plus=36	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=258	key=AE015451__5988788__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=252	max_left_minus=252	max_left_plus=251	max_min_left=130	max_min_left_minus=130	max_min_left_plus=125	max_min_right=140	max_min_right_minus=106	max_min_right_plus=140	max_pos_hash_score=516	max_right=252	max_right_minus=252	max_right_plus=252	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=74	polymorphism_frequency=9.875e-01	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=18	side_1_possible_overlap_registers=276	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=74
UN	209	.	AE015451	171522	173216
UN	210	.	AE015451	173624	176137
UN	211	.	AE015451	176824	181529
UN	212	.	AE015451	203155	203171
UN	213	.	AE015451	207141	207141
UN	214	.	AE015451	207145	207181
UN	215	.	AE015451	207706	208730
UN	216	.	AE015451	209193	209194
UN	217	.	AE015451	209198	209198
UN	218	.	AE015451	209200	209848
UN	219	.	AE015451	209851	209851
UN	220	.	AE015451	209859	209861
UN	221	.	AE015451	214495	215121
UN	222	.	AE015451	215123	215123
UN	223	.	AE015451	215585	216683
UN	224	.	AE015451	400560	400663
UN	225	.	AE015451	525108	526271
UN	226	.	AE015451	527330	527645
UN	227	.	AE015451	528204	529435
UN	228	.	AE015451	611141	611141
UN	229	.	AE015451	611148	611943
UN	230	.	AE015451	697810	698006
UN	231	.	AE015451	698010	698010
UN	232	.	AE015451	698528	699153
UN	233	.	AE015451	699938	702513
UN	234	.	AE015451	741728	743124
UN	235	.	AE015451	745182	746714
UN	236	.	AE015451	1164572	1165401
UN	237	.	AE015451	1296751	1298278
UN	238	.	AE015451	1325629	1325634
UN	239	.	AE015451	1325636	1326837
UN	240	.	AE015451	1327358	1330220
UN	241	.	AE015451	1331040	1331087
UN	242	.	AE015451	1331646	1331779
UN	243	.	AE015451	1425931	1427325
UN	244	.	AE015451	1429775	1429775
UN	245	.	AE015451	1429784	1429784
UN	246	.	AE015451	1429789	1429925
UN	247	.	AE015451	1430445	1431178
UN	248	.	AE015451	1431201	1431202
UN	249	.	AE015451	1440253	1441783
UN	250	.	AE015451	1551356	1552836
UN	251	.	AE015451	1644998	1647355
UN	252	.	AE015451	1709370	1712009
UN	253	.	AE015451	1793553	1793741
UN	254	.	AE015451	1820066	1821467
UN	255	.	AE015451	1847317	1848128
UN	256	.	AE015451	1936848	1936849
UN	257	.	AE015451	2032505	2034184
UN	258	.	AE015451	2069471	2070627
UN	259	.	AE015451	2070629	2070631
UN	260	.	AE015451	2070633	2070633
UN	261	.	AE015451	2070636	2070636
UN	262	.	AE015451	2086029	2086928
UN	263	.	AE015451	2256785	2257947
UN	264	.	AE015451	2413271	2414211
UN	265	.	AE015451	2435500	2436305
UN	266	.	AE015451	2529389	2529389
UN	267	.	AE015451	2529391	2529391
UN	268	.	AE015451	2529394	2530596
UN	269	.	AE015451	2530598	2530600
UN	270	.	AE015451	2530602	2530602
UN	271	.	AE015451	2548693	2549995
UN	272	.	AE015451	2550125	2550125
UN	273	.	AE015451	2550784	2551034
UN	274	.	AE015451	2551598	2553631
UN	275	.	AE015451	2837164	2837164
UN	276	.	AE015451	2837169	2837169
UN	277	.	AE015451	2869561	2870427
UN	278	.	AE015451	2937931	2937931
UN	279	.	AE015451	2937934	2939121
UN	280	.	AE015451	2987452	2987452
UN	281	.	AE015451	2987459	2987892
UN	282	.	AE015451	3276979	3278122
UN	283	.	AE015451	3523097	3523098
UN	284	.	AE015451	3523101	3523102
UN	285	.	AE015451	3523104	3524909
UN	286	.	AE015451	3524912	3524912
UN	287	.	AE015451	3594203	3595619
UN	288	.	AE015451	3595622	3595622
UN	289	.	AE015451	3808708	3808839
UN	290	.	AE015451	3809380	3809432
UN	291	.	AE015451	3817781	3817993
UN	292	.	AE015451	3826507	3828057
UN	293	.	AE015451	3968147	3968216
UN	294	.	AE015451	3969544	3971379
UN	295	.	AE015451	3971382	3971383
UN	296	.	AE015451	3971385	3971385
UN	297	.	AE015451	3972032	3972836
UN	298	.	AE015451	4073958	4075504
UN	299	.	AE015451	4075508	4075508
UN	300	.	AE015451	4108685	4109149
UN	301	.	AE015451	4109151	4109151
UN	302	.	AE015451	4236791	4239277
UN	303	.	AE015451	4347410	4347856
UN	304	.	AE015451	4348370	4348370
UN	305	.	AE015451	4348375	4348375
UN	306	.	AE015451	4348378	4348378
UN	307	.	AE015451	4348380	4348380
UN	308	.	AE015451	4348384	4348470
UN	309	.	AE015451	4391790	4393180
UN	310	.	AE015451	4393183	4393183
UN	311	.	AE015451	4486566	4488443
UN	312	.	AE015451	4488445	4488445
UN	313	.	AE015451	4493604	4495427
UN	314	.	AE015451	4495429	4495437
UN	315	.	AE015451	4536464	4537978
UN	316	.	AE015451	4537983	4537983
UN	317	.	AE015451	4537985	4537985
UN	318	.	AE015451	4808176	4808179
UN	319	.	AE015451	4892114	4893525
UN	320	.	AE015451	4908453	4908454
UN	321	.	AE015451	4908456	4909371
UN	322	.	AE015451	5033387	5035268
UN	323	.	AE015451	5036372	5038210
UN	324	.	AE015451	5038213	5038215
UN	325	.	AE015451	5219138	5219138
UN	326	.	AE015451	5219140	5219142
UN	327	.	AE015451	5219144	5219950
UN	328	.	AE015451	5222828	5224371
UN	329	.	AE015451	5280991	5282360
UN	330	.	AE015451	5282364	5282364
UN	331	.	AE015451	5307854	5310510
UN	332	.	AE015451	5310516	5310516
UN	333	.	AE015451	5311369	5311369
UN	334	.	AE015451	5311372	5312693
UN	335	.	AE015451	5342745	5344425
UN	336	.	AE015451	5402019	5403524
UN	337	.	AE015451	5403528	5403528
UN	338	.	AE015451	5403532	5403532
UN	339	.	AE015451	5453255	5454447
UN	340	.	AE015451	5757063	5757850
UN	341	.	AE015451	6038131	6038922
UN	342	.	AE015451	6153195	6155020