#=GENOME_DIFF	1.0
#=CREATED	15:39:12 06 Oct 2021
#=PROGRAM	breseq 0.35.5 revision 9f368df52761
#=COMMAND	breseq -r ../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff -j 8 -o LC040_1_01/ ../../rawdata/2021-10-04/LC040_01_S1_L001_R1_001.fastq ../../rawdata/2021-10-04/LC040_01_S1_L001_R2_001.fastq
#=REFSEQ	../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff
#=READSEQ	../../rawdata/2021-10-04/LC040_01_S1_L001_R1_001.fastq
#=READSEQ	../../rawdata/2021-10-04/LC040_01_S1_L001_R2_001.fastq
#=CONVERTED-BASES	529413549
#=CONVERTED-READS	1758849
#=INPUT-BASES	529507762
#=INPUT-READS	1759162
#=MAPPED-BASES	421545834
#=MAPPED-READS	1413307
SNP	1	59	AE015451	187648	A
INS	2	73	AE015451	278744	A
INS	3	74	AE015451	307866	C
INS	4	75	AE015451	336125	T
SNP	5	76	AE015451	353067	G
SNP	6	78	AE015451	499203	G
INS	7	82	AE015451	1126647	C
SUB	8	136,153	AE015451	1164572	830	TCA
INS	9	84	AE015451	1419549	C
SUB	10	85,86	AE015451	1499480	2	AC
SUB	11	87,88	AE015451	1499498	1	CG
INS	12	89	AE015451	1499508	C
SUB	13	139,154	AE015451	1709370	2640	CGGCCGC
INS	14	90	AE015451	1932640	C
SUB	15	140,155	AE015451	2032505	1680	GCGGCCGC
SNP	16	92	AE015451	2935792	A
SNP	17	93	AE015451	2958523	T
DEL	18	94	AE015451	3137784	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
INS	19	95	AE015451	3845705	G
SNP	20	96	AE015451	3951159	C
SNP	21	97	AE015451	3951161	T
SNP	22	98	AE015451	4025384	C
SUB	23	101,102	AE015451	4586030	2	TC
INS	24	103	AE015451	4586035	G
INS	25	104	AE015451	4586057	C
DEL	26	105	AE015451	4740811	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	27	106	AE015451	4740816	G
SUB	28	107,108	AE015451	4740819	2	CT
INS	29	109	AE015451	4741228	C
SNP	30	110	AE015451	4741230	G
SNP	31	111	AE015451	4741232	T
SNP	32	112	AE015451	4741235	T
SNP	33	113	AE015451	4741238	G
SUB	34	114,115	AE015451	4741240	2	CT
DEL	35	116	AE015451	4741246	1
INS	36	117	AE015451	4741254	T
SNP	37	118	AE015451	4741258	G
DEL	38	119	AE015451	4741262	1
SNP	39	120	AE015451	4741263	C
SNP	40	121	AE015451	4741272	G
SNP	41	122	AE015451	4741274	C
SNP	42	123	AE015451	4741276	C
SNP	43	124	AE015451	4741278	T
INS	44	125	AE015451	4741283	T
SNP	45	126	AE015451	4741289	G
SNP	46	127	AE015451	4741292	T
SNP	47	128	AE015451	4741294	G
SNP	48	129	AE015451	4741296	C
SNP	49	130	AE015451	4741298	T
SNP	50	131	AE015451	4889556	A
SUB	51	143,159	AE015451	4892114	1412	GCGGCCGC
INS	52	162	AE015451	4980585	GGC
SUB	53	145,164	AE015451	5342745	1681	GCGGCCGC
INS	54	169	AE015451	5555608	GCC
INS	55	132	AE015451	5674751	G
SNP	56	133	AE015451	5674753	C
INS	57	170	AE015451	5681415	CGGG
SNP	58	134	AE015451	6013885	C
RA	59	.	AE015451	187648	0	T	A	consensus_score=306.5	frequency=1	major_base=A	major_cov=46/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/42
RA	60	.	AE015451	195505	0	C	G	bias_e_value=5226260	bias_p_value=0.845417	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.3	fisher_strand_p_value=0.563595	frequency=2.388e-01	ks_quality_p_value=0.88421	major_base=C	major_cov=20/31	major_frequency=7.612e-01	minor_base=G	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.388e-01	polymorphism_score=38.1	prediction=polymorphism	ref_cov=20/31	total_cov=28/39
RA	61	.	AE015451	195559	0	C	A	bias_e_value=6156870	bias_p_value=0.995956	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=1	frequency=3.902e-01	ks_quality_p_value=0.911427	major_base=C	major_cov=22/28	major_frequency=6.098e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.902e-01	polymorphism_score=79.1	prediction=polymorphism	ref_cov=22/28	total_cov=38/46
RA	62	.	AE015451	195634	0	C	T	bias_e_value=5239680	bias_p_value=0.847588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.8	fisher_strand_p_value=0.647825	frequency=3.571e-01	ks_quality_p_value=0.774076	major_base=C	major_cov=23/31	major_frequency=6.429e-01	minor_base=T	minor_cov=15/15	new_cov=15/15	polymorphism_frequency=3.571e-01	polymorphism_score=68.5	prediction=polymorphism	ref_cov=23/31	total_cov=39/50
RA	63	.	AE015451	196372	0	A	G	bias_e_value=5447410	bias_p_value=0.88119	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.1	fisher_strand_p_value=0.795208	frequency=2.838e-01	ks_quality_p_value=0.69668	major_base=A	major_cov=31/22	major_frequency=7.162e-01	minor_base=G	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=2.838e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=31/22	total_cov=42/33
RA	64	.	AE015451	196432	0	T	C	bias_e_value=5729730	bias_p_value=0.926859	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.3	fisher_strand_p_value=0.643699	frequency=3.529e-01	ks_quality_p_value=0.998575	major_base=T	major_cov=36/19	major_frequency=6.471e-01	minor_base=C	minor_cov=18/12	new_cov=18/12	polymorphism_frequency=3.529e-01	polymorphism_score=69.0	prediction=polymorphism	ref_cov=36/19	total_cov=55/34
RA	65	.	AE015451	196438	0	T	C	bias_e_value=2641270	bias_p_value=0.42726	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.6	fisher_strand_p_value=0.514567	frequency=4.944e-01	ks_quality_p_value=0.284072	major_base=T	major_cov=26/19	major_frequency=5.056e-01	minor_base=C	minor_cov=29/15	new_cov=29/15	polymorphism_frequency=4.944e-01	polymorphism_score=122.3	prediction=polymorphism	ref_cov=26/19	total_cov=55/35
RA	66	.	AE015451	196459	0	C	A	bias_e_value=726586	bias_p_value=0.117535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.41788	frequency=4.500e-01	ks_quality_p_value=0.0600289	major_base=C	major_cov=29/26	major_frequency=5.500e-01	minor_base=A	minor_cov=28/17	new_cov=28/17	polymorphism_frequency=4.500e-01	polymorphism_score=128.8	prediction=polymorphism	ref_cov=29/26	total_cov=59/43
RA	67	.	AE015451	196489	0	T	C	bias_e_value=5181850	bias_p_value=0.838233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.494536	frequency=2.621e-01	ks_quality_p_value=0.987129	major_base=T	major_cov=43/33	major_frequency=7.379e-01	minor_base=C	minor_cov=18/9	new_cov=18/9	polymorphism_frequency=2.621e-01	polymorphism_score=45.7	prediction=polymorphism	ref_cov=43/33	total_cov=62/44
RA	68	.	AE015451	196495	0	G	C	bias_e_value=4365360	bias_p_value=0.706155	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.6	fisher_strand_p_value=0.553301	frequency=4.434e-01	ks_quality_p_value=0.613422	major_base=G	major_cov=32/27	major_frequency=5.566e-01	minor_base=C	minor_cov=29/18	new_cov=29/18	polymorphism_frequency=4.434e-01	polymorphism_score=152.3	prediction=polymorphism	ref_cov=32/27	total_cov=62/45
RA	69	.	AE015451	196579	0	G	A	bias_e_value=3666740	bias_p_value=0.593144	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.7	fisher_strand_p_value=0.323696	frequency=3.571e-01	ks_quality_p_value=0.764714	major_base=G	major_cov=35/37	major_frequency=6.429e-01	minor_base=A	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=3.571e-01	polymorphism_score=96.9	prediction=polymorphism	ref_cov=35/37	total_cov=63/56
RA	70	.	AE015451	196795	0	G	C	bias_e_value=5582790	bias_p_value=0.90309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=0.593405	frequency=2.338e-01	ks_quality_p_value=1	major_base=G	major_cov=22/37	major_frequency=7.662e-01	minor_base=C	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=2.338e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=22/37	total_cov=33/48
RA	71	.	AE015451	196879	0	G	A	bias_e_value=5844020	bias_p_value=0.945348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.1	fisher_strand_p_value=0.688157	frequency=3.136e-01	ks_quality_p_value=1	major_base=G	major_cov=35/46	major_frequency=6.864e-01	minor_base=A	minor_cov=14/23	new_cov=14/23	polymorphism_frequency=3.136e-01	polymorphism_score=71.7	prediction=polymorphism	ref_cov=35/46	total_cov=49/69
RA	72	.	AE015451	197632	0	T	C	bias_e_value=4510220	bias_p_value=0.729587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.1	fisher_strand_p_value=0.537191	frequency=2.545e-01	ks_quality_p_value=0.673427	major_base=T	major_cov=23/18	major_frequency=7.455e-01	minor_base=C	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.545e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=23/18	total_cov=30/26
RA	73	.	AE015451	278742	1	.	A	bias_e_value=6181070	bias_p_value=0.99987	consensus_score=189.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983897	major_base=A	major_cov=36/19	major_frequency=9.821e-01	minor_base=.	minor_cov=1/0	new_cov=36/19	polymorphism_frequency=9.821e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=37/19
RA	74	.	AE015451	307865	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=343.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=48/49	major_frequency=9.604e-01	minor_base=.	minor_cov=2/2	new_cov=48/49	polymorphism_frequency=9.604e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=2/2	total_cov=50/51
RA	75	.	AE015451	336124	1	.	T	consensus_score=125.9	frequency=1	major_base=T	major_cov=14/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/23
RA	76	.	AE015451	353067	0	A	G	consensus_score=129.9	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	77	.	AE015451	441326	0	G	.	bias_e_value=2204440	bias_p_value=0.356598	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.2	fisher_strand_p_value=1	frequency=2.545e-01	ks_quality_p_value=0.111727	major_base=G	major_cov=22/19	major_frequency=7.455e-01	minor_base=.	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.545e-01	polymorphism_score=48.9	prediction=polymorphism	ref_cov=22/19	total_cov=30/25
RA	78	.	AE015451	499203	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=137.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/23	major_frequency=9.756e-01	minor_base=C	minor_cov=0/1	new_cov=17/23	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	79	.	AE015451	699722	0	A	G	bias_e_value=5069680	bias_p_value=0.820089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.8	fisher_strand_p_value=0.466183	frequency=5.902e-01	ks_quality_p_value=0.99475	major_base=G	major_cov=31/41	major_frequency=5.902e-01	minor_base=A	minor_cov=25/25	new_cov=31/41	polymorphism_frequency=5.902e-01	polymorphism_score=136.7	prediction=polymorphism	ref_cov=25/25	total_cov=57/66
RA	80	.	AE015451	1070246	1	.	G	bias_e_value=470872	bias_p_value=0.0761698	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=0.0149068	frequency=7.692e-01	ks_quality_p_value=0.977187	major_base=G	major_cov=13/7	major_frequency=7.692e-01	minor_base=.	minor_cov=0/6	new_cov=13/7	polymorphism_frequency=7.692e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=0/6	total_cov=14/13
RA	81	.	AE015451	1070246	2	.	A	bias_e_value=205308	bias_p_value=0.0332113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=0.0057971	frequency=7.778e-01	ks_quality_p_value=0.918828	major_base=A	major_cov=14/7	major_frequency=7.778e-01	minor_base=.	minor_cov=0/6	new_cov=14/7	polymorphism_frequency=7.778e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=0/6	total_cov=14/13
RA	82	.	AE015451	1126645	1	.	C	consensus_score=103.0	frequency=1	major_base=C	major_cov=16/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/14
RA	83	.	AE015451	1327121	0	C	T	bias_e_value=408442	bias_p_value=0.0660709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.4	fisher_strand_p_value=0.0768053	frequency=4.259e-01	ks_quality_p_value=0.15918	major_base=C	major_cov=22/40	major_frequency=5.741e-01	minor_base=T	minor_cov=25/21	new_cov=25/21	polymorphism_frequency=4.259e-01	polymorphism_score=134.3	prediction=polymorphism	ref_cov=22/40	total_cov=48/61
RA	84	.	AE015451	1419548	1	.	C	consensus_score=46.9	frequency=1	major_base=C	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	85	.	AE015451	1499480	0	C	A	bias_e_value=3316440	bias_p_value=0.536479	consensus_score=93.7	fisher_strand_p_value=0.209195	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=12/16	major_frequency=9.333e-01	minor_base=C	minor_cov=2/0	new_cov=12/16	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=14/16
RA	86	.	AE015451	1499481	0	A	C	bias_e_value=5083550	bias_p_value=0.822332	consensus_score=93.8	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=13/16	major_frequency=9.667e-01	minor_base=A	minor_cov=1/0	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=14/16
RA	87	.	AE015451	1499497	1	.	C	bias_e_value=6179880	bias_p_value=0.999677	consensus_score=88.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974685	major_base=C	major_cov=10/16	major_frequency=9.630e-01	minor_base=.	minor_cov=0/1	new_cov=10/16	polymorphism_frequency=9.630e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/1	total_cov=10/17
RA	88	.	AE015451	1499498	0	T	G	bias_e_value=6181850	bias_p_value=0.999996	consensus_score=86.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997155	major_base=G	major_cov=10/16	major_frequency=9.630e-01	minor_base=A	minor_cov=0/1	new_cov=10/16	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	89	.	AE015451	1499506	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=85.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=11/15	major_frequency=9.630e-01	minor_base=.	minor_cov=0/1	new_cov=11/15	polymorphism_frequency=9.630e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=11/16
RA	90	.	AE015451	1932638	1	.	C	consensus_score=61.0	frequency=1	major_base=C	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	91	.	AE015451	2550125	0	G	A	bias_e_value=2581400	bias_p_value=0.417576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.7	fisher_strand_p_value=0.311464	frequency=6.620e-01	ks_quality_p_value=0.453287	major_base=A	major_cov=27/20	major_frequency=6.620e-01	minor_base=G	minor_cov=17/7	new_cov=27/20	polymorphism_frequency=6.620e-01	polymorphism_score=60.4	prediction=polymorphism	ref_cov=17/7	total_cov=45/27
RA	92	.	AE015451	2935792	0	G	A	bias_e_value=5110390	bias_p_value=0.826673	consensus_score=180.2	fisher_strand_p_value=0.472727	frequency=1	ks_quality_p_value=0.999327	major_base=A	major_cov=29/25	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=29/25	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/27
RA	93	.	AE015451	2958523	0	C	T	bias_e_value=2115690	bias_p_value=0.342241	consensus_score=129.3	fisher_strand_p_value=0.105263	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/26	major_frequency=9.487e-01	minor_base=G	minor_cov=2/0	new_cov=11/26	polymorphism_frequency=9.487e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/26
RA	94	.	AE015451	3137776	0	T	.	bias_e_value=5940090	bias_p_value=0.960889	consensus_score=133.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.733684	major_base=.	major_cov=16/14	major_frequency=9.677e-01	minor_base=T	minor_cov=1/0	new_cov=16/14	polymorphism_frequency=9.677e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=1/0	total_cov=17/14
RA	95	.	AE015451	3845703	1	.	G	bias_e_value=6181210	bias_p_value=0.999893	consensus_score=106.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985402	major_base=G	major_cov=15/17	major_frequency=9.412e-01	minor_base=.	minor_cov=1/1	new_cov=15/17	polymorphism_frequency=9.412e-01	polymorphism_score=-0.6	prediction=consensus	ref_cov=1/1	total_cov=16/18
RA	96	.	AE015451	3951159	0	T	C	consensus_score=79.7	frequency=1	major_base=C	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	97	.	AE015451	3951161	0	A	T	bias_e_value=6181870	bias_p_value=1	consensus_score=73.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/10	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=13/10	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	98	.	AE015451	4025384	0	T	C	consensus_score=245.4	frequency=1	major_base=C	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	99	.	AE015451	4236779	0	T	G	consensus_score=27.9	deleted=1	frequency=1	major_base=G	major_cov=1/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/8
RA	100	.	AE015451	4348705	0	A	G	bias_e_value=5512130	bias_p_value=0.89166	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.3	fisher_strand_p_value=1	frequency=4.128e-01	ks_quality_p_value=0.572235	major_base=A	major_cov=24/40	major_frequency=5.872e-01	minor_base=G	minor_cov=16/29	new_cov=16/29	polymorphism_frequency=4.128e-01	polymorphism_score=129.0	prediction=polymorphism	ref_cov=24/40	total_cov=40/69
RA	101	.	AE015451	4586030	0	C	T	bias_e_value=5030880	bias_p_value=0.813812	consensus_score=32.4	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=0.987261	major_base=T	major_cov=5/7	major_frequency=9.231e-01	minor_base=C	minor_cov=1/0	new_cov=5/7	polymorphism_frequency=9.231e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=6/7
RA	102	.	AE015451	4586031	0	T	C	bias_e_value=5059220	bias_p_value=0.818395	consensus_score=34.9	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=9.231e-01	minor_base=G	minor_cov=1/0	new_cov=5/7	polymorphism_frequency=9.231e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	103	.	AE015451	4586033	1	.	G	bias_e_value=5059220	bias_p_value=0.818395	consensus_score=38.5	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/7	major_frequency=9.231e-01	minor_base=.	minor_cov=1/0	new_cov=5/7	polymorphism_frequency=9.231e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=6/7
RA	104	.	AE015451	4586056	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=25.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/4	major_frequency=9.000e-01	minor_base=.	minor_cov=1/0	new_cov=5/4	polymorphism_frequency=9.000e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=6/4
RA	105	.	AE015451	4740805	0	T	.	consensus_score=83.1	frequency=1	major_base=.	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	106	.	AE015451	4740816	0	T	G	consensus_score=56.4	frequency=1	major_base=G	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	107	.	AE015451	4740819	0	T	C	consensus_score=61.9	frequency=1	major_base=C	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	108	.	AE015451	4740820	0	G	T	consensus_score=60.0	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	109	.	AE015451	4741228	1	.	C	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=105.9	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/14	major_frequency=9.375e-01	minor_base=.	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	110	.	AE015451	4741230	0	A	G	bias_e_value=5153620	bias_p_value=0.833666	consensus_score=99.7	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.995842	major_base=G	major_cov=16/14	major_frequency=9.375e-01	minor_base=A	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	111	.	AE015451	4741232	0	C	T	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=98.3	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/14	major_frequency=9.375e-01	minor_base=C	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	112	.	AE015451	4741235	0	C	T	bias_e_value=3473120	bias_p_value=0.561824	consensus_score=90.7	fisher_strand_p_value=0.225806	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/13	major_frequency=9.062e-01	minor_base=C	minor_cov=0/3	new_cov=16/13	polymorphism_frequency=9.062e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/3	total_cov=16/16
RA	113	.	AE015451	4741238	0	C	G	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=103.0	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/14	major_frequency=9.375e-01	minor_base=C	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	114	.	AE015451	4741240	0	A	C	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=109.2	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/14	major_frequency=9.375e-01	minor_base=A	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	115	.	AE015451	4741241	0	C	T	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=98.8	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/14	major_frequency=9.375e-01	minor_base=C	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	116	.	AE015451	4741245	0	A	.	bias_e_value=6181870	bias_p_value=1	consensus_score=137.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	117	.	AE015451	4741254	1	.	T	bias_e_value=5153620	bias_p_value=0.833666	consensus_score=100.2	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.995842	major_base=T	major_cov=16/14	major_frequency=9.375e-01	minor_base=.	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	118	.	AE015451	4741258	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=110.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/15	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	119	.	AE015451	4741261	0	A	.	bias_e_value=6181860	bias_p_value=0.999998	consensus_score=140.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=.	major_cov=16/15	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	120	.	AE015451	4741263	0	A	C	consensus_score=113.1	frequency=1	major_base=C	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	121	.	AE015451	4741272	0	A	G	bias_e_value=6181670	bias_p_value=0.999968	consensus_score=104.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991968	major_base=G	major_cov=16/15	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	122	.	AE015451	4741274	0	A	C	bias_e_value=5162670	bias_p_value=0.835131	consensus_score=109.5	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/14	major_frequency=9.375e-01	minor_base=A	minor_cov=0/2	new_cov=16/14	polymorphism_frequency=9.375e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/2	total_cov=16/16
RA	123	.	AE015451	4741276	0	G	C	bias_e_value=6071910	bias_p_value=0.982212	consensus_score=113.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.817411	major_base=C	major_cov=16/15	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	124	.	AE015451	4741278	0	C	T	bias_e_value=6025270	bias_p_value=0.974668	consensus_score=102.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.783526	major_base=T	major_cov=16/15	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	125	.	AE015451	4741283	1	.	T	bias_e_value=5158000	bias_p_value=0.834375	consensus_score=103.7	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.997852	major_base=T	major_cov=16/14	major_frequency=9.677e-01	minor_base=G	minor_cov=0/1	new_cov=16/14	polymorphism_frequency=9.677e-01	polymorphism_score=-6.9	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	126	.	AE015451	4741289	0	C	G	consensus_score=110.4	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	127	.	AE015451	4741292	0	C	T	consensus_score=112.2	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	128	.	AE015451	4741294	0	C	G	consensus_score=113.0	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	129	.	AE015451	4741296	0	A	C	bias_e_value=6181870	bias_p_value=1	consensus_score=111.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=16/15	major_frequency=9.688e-01	minor_base=A	minor_cov=0/1	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/16
RA	130	.	AE015451	4741298	0	C	T	consensus_score=111.7	frequency=1	major_base=T	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	131	.	AE015451	4889556	0	G	A	consensus_score=97.7	frequency=1	major_base=A	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	132	.	AE015451	5674750	1	.	G	bias_e_value=5043830	bias_p_value=0.815906	consensus_score=163.1	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=21/26	major_frequency=9.792e-01	minor_base=.	minor_cov=1/0	new_cov=21/26	polymorphism_frequency=9.792e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=1/0	total_cov=22/26
RA	133	.	AE015451	5674753	0	G	C	bias_e_value=6178790	bias_p_value=0.999501	consensus_score=158.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.968589	major_base=C	major_cov=22/25	major_frequency=9.792e-01	minor_base=A	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	134	.	AE015451	6013885	0	T	C	bias_e_value=6181860	bias_p_value=0.999998	consensus_score=107.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998108	major_base=C	major_cov=14/18	major_frequency=9.697e-01	minor_base=T	minor_cov=0/1	new_cov=14/18	polymorphism_frequency=9.697e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/1	total_cov=14/20
MC	135	.	AE015451	207681	216687	1316	1321	left_inside_cov=16	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	136	.	AE015451	1164572	1165401	0	0	left_inside_cov=0	left_outside_cov=66	right_inside_cov=0	right_outside_cov=67
MC	137	.	AE015451	1551316	1552877	0	0	left_inside_cov=15	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	138	.	AE015451	1644902	1647408	0	0	left_inside_cov=16	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	139	.	AE015451	1709370	1712009	0	0	left_inside_cov=0	left_outside_cov=41	right_inside_cov=0	right_outside_cov=43
MC	140	.	AE015451	2032505	2034184	0	0	left_inside_cov=0	left_outside_cov=45	right_inside_cov=0	right_outside_cov=43
MC	141	.	AE015451	3276946	3278207	0	0	left_inside_cov=16	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	142	.	AE015451	4236750	4239305	0	0	left_inside_cov=16	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	143	.	AE015451	4892114	4893525	0	0	left_inside_cov=0	left_outside_cov=39	right_inside_cov=0	right_outside_cov=40
MC	144	.	AE015451	5280917	5282427	0	0	left_inside_cov=16	left_outside_cov=17	right_inside_cov=16	right_outside_cov=17
MC	145	.	AE015451	5342745	5344425	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=0	right_outside_cov=27
JC	146	.	AE015451	1	1	AE015451	6181873	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=52	coverage_plus=54	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=300	key=AE015451__1__1__AE015451__6181873__-1__0____301__301__0__0	max_left=292	max_left_minus=290	max_left_plus=292	max_min_left=146	max_min_left_minus=146	max_min_left_plus=143	max_min_right=145	max_min_right_minus=136	max_min_right_plus=145	max_pos_hash_score=600	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.57	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	147	.	AE015451	71309	1	AE015451	2773920	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=4.007e-02	junction_possible_overlap_registers=296	key=AE015451__71309__1__AE015451__2773924__-1__4____301__301__0__0	max_left=151	max_left_minus=151	max_left_plus=62	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=146	max_min_right_minus=146	max_min_right_plus=0	max_pos_hash_score=592	max_right=288	max_right_minus=146	max_right_plus=288	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.007e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=4	side_1_possible_overlap_registers=300	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=296	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=3
JC	148	.	AE015451	264198	-1	AE015451	2410920	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=4.380e-02	junction_possible_overlap_registers=300	key=AE015451__264198__-1__AE015451__2410920__-1__0____301__301__0__0	max_left=298	max_left_minus=298	max_left_plus=75	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=600	max_right=225	max_right_minus=71	max_right_plus=225	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.380e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	149	.	AE015451	274147	1	AE015451	274143	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=3.383e-02	junction_possible_overlap_registers=291	key=AE015451__274147__1__AE015451__274152__-1__9____301__301__0__0	max_left=235	max_left_minus=235	max_left_plus=150	max_min_left=102	max_min_left_minus=0	max_min_left_plus=102	max_min_right=142	max_min_right_minus=56	max_min_right_plus=142	max_pos_hash_score=582	max_right=189	max_right_minus=56	max_right_plus=189	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=3.383e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=9	side_1_possible_overlap_registers=300	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	150	.	AE015451	610901	1	AE015451	812297	-1	0	alignment_overlap=18	coverage_minus=37	coverage_plus=27	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__610883__1__AE015451__812297__-1__18____301__301__1__0	max_left=267	max_left_minus=266	max_left_plus=267	max_min_left=132	max_min_left_minus=132	max_min_left_plus=128	max_min_right=137	max_min_right_minus=131	max_min_right_plus=137	max_pos_hash_score=564	max_right=276	max_right_minus=276	max_right_plus=269	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=18	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64
JC	151	.	AE015451	812296	1	AE015451	2436567	-1	0	alignment_overlap=7	coverage_minus=39	coverage_plus=34	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__812296__1__AE015451__2436574__-1__7____301__301__0__1	max_left=290	max_left_minus=290	max_left_plus=290	max_min_left=146	max_min_left_minus=144	max_min_left_plus=146	max_min_right=146	max_min_right_minus=146	max_min_right_plus=142	max_pos_hash_score=586	max_right=281	max_right_minus=278	max_right_plus=281	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.16	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=73
JC	152	.	AE015451	973724	1	AE015451	3952435	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=5.238e-02	junction_possible_overlap_registers=299	key=AE015451__973724__1__AE015451__3952434__1__1____301__301__0__0	max_left=128	max_left_minus=128	max_left_plus=81	max_min_left=128	max_min_left_minus=128	max_min_left_plus=81	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=598	max_right=296	max_right_minus=171	max_right_plus=296	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=5.238e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=1	side_1_possible_overlap_registers=300	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4
JC	153	.	AE015451	1164571	-1	AE015451	1165402	1	-3	alignment_overlap=-3	coverage_minus=24	coverage_plus=38	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__1164571__-1__AE015451__1165402__1__-3__TCA__301__301__0__0	max_left=296	max_left_minus=296	max_left_plus=285	max_min_left=148	max_min_left_minus=105	max_min_left_plus=148	max_min_right=135	max_min_right_minus=128	max_min_right_plus=135	max_pos_hash_score=594	max_right=293	max_right_minus=293	max_right_plus=288	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=TCA
JC	154	.	AE015451	1709369	-1	AE015451	1712010	1	-7	alignment_overlap=-7	coverage_minus=20	coverage_plus=21	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__1709369__-1__AE015451__1712010__1__-7__CGGCCGC__301__301__0__0	max_left=287	max_left_minus=287	max_left_plus=265	max_min_left=139	max_min_left_minus=135	max_min_left_plus=139	max_min_right=144	max_min_right_minus=118	max_min_right_plus=144	max_pos_hash_score=586	max_right=285	max_right_minus=278	max_right_plus=285	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.62	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41	unique_read_sequence=CGGCCGC
JC	155	.	AE015451	2032504	-1	AE015451	2034185	1	-8	alignment_overlap=-8	coverage_minus=22	coverage_plus=21	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__2032504__-1__AE015451__2034185__1__-8__GCGGCCGC__301__301__0__0	max_left=258	max_left_minus=240	max_left_plus=258	max_min_left=143	max_min_left_minus=143	max_min_left_plus=126	max_min_right=142	max_min_right_minus=142	max_min_right_plus=132	max_pos_hash_score=584	max_right=281	max_right_minus=281	max_right_plus=278	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.65	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43	unique_read_sequence=GCGGCCGC
JC	156	.	AE015451	4022305	-1	AE015451	4022806	1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=2.685e-01	junction_possible_overlap_registers=290	key=AE015451__4022305__-1__AE015451__4022796__1__10____301__301__0__0	max_left=217	max_left_minus=217	max_left_plus=165	max_min_left=137	max_min_left_minus=137	max_min_left_plus=118	max_min_right=117	max_min_right_minus=117	max_min_right_plus=115	max_pos_hash_score=580	max_right=265	max_right_minus=265	max_right_plus=193	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.14	new_junction_read_count=9	polymorphism_frequency=2.685e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=10	side_1_possible_overlap_registers=300	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=9
JC	157	.	AE015451	4808174	1	AE015451	5988935	-1	0	alignment_overlap=35	coverage_minus=2	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=2.798e-01	junction_possible_overlap_registers=265	key=AE015451__4808174__1__AE015451__5988970__-1__35____301__301__0__0	max_left=237	max_left_minus=229	max_left_plus=237	max_min_left=130	max_min_left_minus=0	max_min_left_plus=130	max_min_right=81	max_min_right_minus=40	max_min_right_plus=81	max_pos_hash_score=530	max_right=136	max_right_minus=40	max_right_plus=136	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.10	new_junction_read_count=6	polymorphism_frequency=2.798e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=35	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=5
JC	158	.	AE015451	4808179	-1	AE015451	5988765	1	0	alignment_overlap=12	coverage_minus=6	coverage_plus=10	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=288	key=AE015451__4808179__-1__AE015451__5988753__1__12____301__301__0__0	max_left=280	max_left_minus=280	max_left_plus=279	max_min_left=115	max_min_left_minus=0	max_min_left_plus=115	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=576	max_right=175	max_right_minus=111	max_right_plus=175	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.32	new_junction_read_count=21	polymorphism_frequency=9.350e-01	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=12	side_1_possible_overlap_registers=300	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=16
JC	159	.	AE015451	4892113	-1	AE015451	4893526	1	-8	alignment_overlap=-8	coverage_minus=16	coverage_plus=21	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__4892113__-1__AE015451__4893526__1__-8__GCGGCCGC__301__301__0__0	max_left=285	max_left_minus=283	max_left_plus=285	max_min_left=132	max_min_left_minus=132	max_min_left_plus=64	max_min_right=143	max_min_right_minus=136	max_min_right_plus=143	max_pos_hash_score=584	max_right=288	max_right_minus=282	max_right_plus=288	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.57	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37	unique_read_sequence=GCGGCCGC
JC	160	.	AE015451	4896440	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=37	coverage_plus=33	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__4896440__1__AE015451__5756790__1__18____301__301__0__1	max_left=282	max_left_minus=282	max_left_plus=275	max_min_left=140	max_min_left_minus=136	max_min_left_plus=140	max_min_right=132	max_min_right_minus=130	max_min_right_plus=132	max_pos_hash_score=564	max_right=259	max_right_minus=259	max_right_plus=242	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.09	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=70
JC	161	.	AE015451	4896441	-1	AE015451	5220211	-1	0	alignment_overlap=7	coverage_minus=29	coverage_plus=33	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__4896441__-1__AE015451__5220218__-1__7____301__301__0__1	max_left=291	max_left_minus=291	max_left_plus=288	max_min_left=143	max_min_left_minus=143	max_min_left_plus=141	max_min_right=145	max_min_right_minus=145	max_min_right_plus=143	max_pos_hash_score=586	max_right=284	max_right_minus=258	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.95	new_junction_read_count=63	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=62
JC	162	.	AE015451	4980585	-1	AE015451	4980586	1	-3	alignment_overlap=-3	coverage_minus=20	coverage_plus=30	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__4980585__-1__AE015451__4980586__1__-3__GGC__301__301__0__0	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=141	max_min_left_minus=126	max_min_left_plus=141	max_min_right=142	max_min_right_minus=141	max_min_right_plus=142	max_pos_hash_score=594	max_right=269	max_right_minus=268	max_right_plus=269	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.74	new_junction_read_count=50	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=GGC
JC	163	.	AE015451	5201567	-1	AE015451	5201666	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=5	flanking_left=301	flanking_right=301	frequency=2.450e-01	junction_possible_overlap_registers=297	key=AE015451__5201567__-1__AE015451__5201663__1__3____301__301__0__0	max_left=205	max_left_minus=0	max_left_plus=205	max_min_left=81	max_min_left_minus=0	max_min_left_plus=81	max_min_right=113	max_min_right_minus=0	max_min_right_plus=113	max_pos_hash_score=594	max_right=285	max_right_minus=0	max_right_plus=285	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.07	new_junction_read_count=5	polymorphism_frequency=2.450e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.26	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=18	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.19	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=13	side_2_redundant=0	total_non_overlap_reads=5
JC	164	.	AE015451	5342744	-1	AE015451	5344426	1	-8	alignment_overlap=-8	coverage_minus=10	coverage_plus=17	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__5342744__-1__AE015451__5344426__1__-8__GCGGCCGC__301__301__0__0	max_left=283	max_left_minus=237	max_left_plus=283	max_min_left=133	max_min_left_minus=133	max_min_left_plus=98	max_min_right=143	max_min_right_minus=98	max_min_right_plus=143	max_pos_hash_score=584	max_right=249	max_right_minus=249	max_right_plus=205	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.41	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=GCGGCCGC
JC	165	.	AE015451	5496516	1	AE015451	5496512	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=3.806e-02	junction_possible_overlap_registers=289	key=AE015451__5496516__1__AE015451__5496523__-1__11____301__301__0__0	max_left=163	max_left_minus=163	max_left_plus=134	max_min_left=134	max_min_left_minus=0	max_min_left_plus=134	max_min_right=125	max_min_right_minus=125	max_min_right_plus=0	max_pos_hash_score=578	max_right=282	max_right_minus=125	max_right_plus=282	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=3.806e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.53	side_1_overlap=11	side_1_possible_overlap_registers=300	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.55	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	166	.	AE015451	5513317	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=28	coverage_plus=46	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5513317__1__AE015451__5756790__1__18____301__301__0__1	max_left=279	max_left_minus=279	max_left_plus=272	max_min_left=135	max_min_left_minus=131	max_min_left_plus=135	max_min_right=141	max_min_right_minus=110	max_min_right_plus=141	max_pos_hash_score=564	max_right=270	max_right_minus=268	max_right_plus=270	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=74
JC	167	.	AE015451	5513318	-1	AE015451	5758121	-1	0	alignment_overlap=7	coverage_minus=36	coverage_plus=36	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5513318__-1__AE015451__5758128__-1__7____301__301__0__1	max_left=287	max_left_minus=287	max_left_plus=286	max_min_left=143	max_min_left_minus=125	max_min_left_plus=143	max_min_right=147	max_min_right_minus=147	max_min_right_plus=140	max_pos_hash_score=586	max_right=288	max_right_minus=246	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.14	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=72
JC	168	.	AE015451	5545080	1	AE015451	5545666	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=7.483e-01	junction_possible_overlap_registers=297	key=AE015451__5545080__1__AE015451__5545669__-1__3____301__301__0__1	max_left=273	max_left_minus=273	max_left_plus=271	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=56	max_min_right_minus=25	max_min_right_plus=56	max_pos_hash_score=594	max_right=56	max_right_minus=25	max_right_plus=56	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=2.31	new_junction_read_count=156	polymorphism_frequency=7.483e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	169	.	AE015451	5555608	-1	AE015451	5555609	1	-3	alignment_overlap=-3	coverage_minus=32	coverage_plus=30	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__5555608__-1__AE015451__5555609__1__-3__GCC__301__301__0__0	max_left=294	max_left_minus=292	max_left_plus=294	max_min_left=146	max_min_left_minus=144	max_min_left_plus=146	max_min_right=128	max_min_right_minus=128	max_min_right_plus=121	max_pos_hash_score=594	max_right=290	max_right_minus=290	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.95	new_junction_read_count=64	polymorphism_frequency=9.700e-01	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=GCC
JC	170	.	AE015451	5681415	-1	AE015451	5681416	1	-4	alignment_overlap=-4	coverage_minus=24	coverage_plus=24	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=296	key=AE015451__5681415__-1__AE015451__5681416__1__-4__CGGG__301__301__0__0	max_left=285	max_left_minus=270	max_left_plus=285	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=143	max_min_right_minus=140	max_min_right_plus=143	max_pos_hash_score=592	max_right=284	max_right_minus=284	max_right_plus=277	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.73	new_junction_read_count=49	polymorphism_frequency=9.803e-01	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=CGGG
JC	171	.	AE015451	5984436	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=35	coverage_plus=28	flanking_left=301	flanking_right=301	frequency=6.768e-01	junction_possible_overlap_registers=282	key=AE015451__5984436__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=275	max_left_minus=273	max_left_plus=275	max_min_left=139	max_min_left_minus=139	max_min_left_plus=136	max_min_right=141	max_min_right_minus=141	max_min_right_plus=140	max_pos_hash_score=564	max_right=263	max_right_minus=263	max_right_plus=261	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=63	polymorphism_frequency=6.768e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.47	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=63
JC	172	.	AE015451	5988787	1	AE015451	6037870	1	0	alignment_overlap=7	coverage_minus=34	coverage_plus=25	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5988787__1__AE015451__6037863__1__7____301__301__0__1	max_left=283	max_left_minus=283	max_left_plus=277	max_min_left=142	max_min_left_minus=142	max_min_left_plus=138	max_min_right=145	max_min_right_minus=136	max_min_right_plus=145	max_pos_hash_score=586	max_right=291	max_right_minus=291	max_right_plus=288	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	173	.	AE015451	5988788	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=28	coverage_plus=36	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5988788__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=281	max_left_minus=281	max_left_plus=278	max_min_left=140	max_min_left_minus=130	max_min_left_plus=140	max_min_right=138	max_min_right_minus=124	max_min_right_plus=138	max_pos_hash_score=564	max_right=277	max_right_minus=277	max_right_plus=232	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.03	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=64
UN	174	.	AE015451	171541	173202
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UN	183	.	AE015451	400550	400550
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UN	189	.	AE015451	529439	529440
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UN	193	.	AE015451	697813	697813
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UN	197	.	AE015451	699935	699937
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UN	200	.	AE015451	741744	743114
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UN	209	.	AE015451	1298303	1298303
UN	210	.	AE015451	1325622	1325622
UN	211	.	AE015451	1325631	1325631
UN	212	.	AE015451	1325638	1325638
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UN	214	.	AE015451	1326840	1326840
UN	215	.	AE015451	1327365	1330257
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UN	221	.	AE015451	1425895	1425895
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UN	225	.	AE015451	1427342	1427342
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UN	256	.	AE015451	2436370	2436370
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UN	262	.	AE015451	2548668	2548668
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UN	269	.	AE015451	2837064	2837064
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UN	281	.	AE015451	2937903	2937903
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UN	289	.	AE015451	3523060	3523060
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