#=GENOME_DIFF	1.0
#=CREATED	16:09:35 06 Oct 2021
#=PROGRAM	breseq 0.35.5 revision 9f368df52761
#=COMMAND	breseq -r ../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff -j 8 -o LC040_JJ305_01/ ../../rawdata/2021-10-04/LC040_JJ305_S4_L001_R1_001.fastq ../../rawdata/2021-10-04/LC040_JJ305_S4_L001_R2_001.fastq
#=REFSEQ	../../genomes/GCA_000007565.2_ASM756v2_genomic.gbff
#=READSEQ	../../rawdata/2021-10-04/LC040_JJ305_S4_L001_R1_001.fastq
#=READSEQ	../../rawdata/2021-10-04/LC040_JJ305_S4_L001_R2_001.fastq
#=CONVERTED-BASES	455057519
#=CONVERTED-READS	1511819
#=INPUT-BASES	455155946
#=INPUT-READS	1512146
#=MAPPED-BASES	390110152
#=MAPPED-READS	1307219
SNP	1	62	AE015451	187648	A
INS	2	74	AE015451	278744	A
INS	3	75	AE015451	307866	C
INS	4	76	AE015451	336125	T
SNP	5	77	AE015451	353067	G
SNP	6	79	AE015451	499203	G
INS	7	81,82	AE015451	1070248	GA
INS	8	83	AE015451	1124554	T
DEL	9	84	AE015451	1124568	1
INS	10	85	AE015451	1126647	C
SUB	11	142,160	AE015451	1164572	830	TCA
INS	12	87	AE015451	1419549	C
SUB	13	88,89	AE015451	1499480	2	AC
SUB	14	90,91	AE015451	1499498	1	CG
INS	15	92	AE015451	1499508	C
SUB	16	145,162	AE015451	1709370	2640	CGGCCGC
SUB	17	146,164	AE015451	2032505	1680	GCGGCCGC
SNP	18	95	AE015451	2935792	A
SNP	19	96	AE015451	2958523	T
DEL	20	97	AE015451	3137784	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
INS	21	98	AE015451	3845705	G
SNP	22	99	AE015451	3951159	C
SNP	23	100	AE015451	3951161	T
SNP	24	101	AE015451	4025384	C
SUB	25	106,107	AE015451	4586030	2	TC
INS	26	108	AE015451	4586035	G
INS	27	109	AE015451	4586057	C
SNP	28	110	AE015451	4714831	A
DEL	29	111	AE015451	4740811	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	30	112	AE015451	4740816	G
SUB	31	113,114	AE015451	4740819	2	CT
INS	32	115	AE015451	4741228	C
SNP	33	116	AE015451	4741230	G
SNP	34	117	AE015451	4741232	T
SNP	35	118	AE015451	4741235	T
SNP	36	119	AE015451	4741238	G
SUB	37	120,121	AE015451	4741240	2	CT
DEL	38	122	AE015451	4741246	1
INS	39	123	AE015451	4741254	T
SNP	40	124	AE015451	4741258	G
DEL	41	125	AE015451	4741262	1
SNP	42	126	AE015451	4741263	C
SNP	43	127	AE015451	4741272	G
SNP	44	128	AE015451	4741274	C
SNP	45	129	AE015451	4741276	C
SNP	46	130	AE015451	4741278	T
INS	47	131	AE015451	4741283	T
SNP	48	132	AE015451	4741289	G
SNP	49	133	AE015451	4741292	T
SNP	50	134	AE015451	4741294	G
SNP	51	135	AE015451	4741296	C
SNP	52	136	AE015451	4741298	T
SNP	53	137	AE015451	4889556	A
SUB	54	149,170	AE015451	4892114	1412	GCGGCCGC
INS	55	175	AE015451	4980585	GGC
SUB	56	151,176	AE015451	5342745	1681	GCGGCCGC
INS	57	180	AE015451	5555608	GCC
INS	58	138	AE015451	5674751	G
SNP	59	139	AE015451	5674753	C
INS	60	181	AE015451	5681415	CGGG
SNP	61	140	AE015451	6013885	C
RA	62	.	AE015451	187648	0	T	A	consensus_score=244.8	frequency=1	major_base=A	major_cov=31/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/37
RA	63	.	AE015451	195559	0	C	A	bias_e_value=6181870	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.6	fisher_strand_p_value=1	frequency=3.276e-01	ks_quality_p_value=1	major_base=C	major_cov=19/20	major_frequency=6.724e-01	minor_base=A	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=3.276e-01	polymorphism_score=40.3	prediction=polymorphism	ref_cov=19/20	total_cov=29/29
RA	64	.	AE015451	195634	0	C	T	bias_e_value=5506990	bias_p_value=0.890829	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.589837	frequency=2.969e-01	ks_quality_p_value=0.96764	major_base=C	major_cov=22/23	major_frequency=7.031e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.969e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=22/23	total_cov=34/33
RA	65	.	AE015451	196372	0	A	G	bias_e_value=5960250	bias_p_value=0.964149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.5	fisher_strand_p_value=1	frequency=2.400e-01	ks_quality_p_value=0.744466	major_base=A	major_cov=16/22	major_frequency=7.600e-01	minor_base=G	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.400e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=16/22	total_cov=21/30
RA	66	.	AE015451	196432	0	T	C	bias_e_value=3519460	bias_p_value=0.569319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.8	fisher_strand_p_value=0.381654	frequency=2.712e-01	ks_quality_p_value=0.604949	major_base=T	major_cov=23/20	major_frequency=7.288e-01	minor_base=C	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.712e-01	polymorphism_score=39.4	prediction=polymorphism	ref_cov=23/20	total_cov=29/33
RA	67	.	AE015451	196438	0	T	C	bias_e_value=4000390	bias_p_value=0.647117	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.5	fisher_strand_p_value=0.292372	frequency=5.345e-01	ks_quality_p_value=0.986741	major_base=C	major_cov=18/13	major_frequency=5.345e-01	minor_base=T	minor_cov=11/16	new_cov=18/13	polymorphism_frequency=5.345e-01	polymorphism_score=70.1	prediction=polymorphism	ref_cov=11/16	total_cov=29/30
RA	68	.	AE015451	196459	0	C	A	bias_e_value=2897880	bias_p_value=0.46877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.6	fisher_strand_p_value=0.371971	frequency=4.615e-01	ks_quality_p_value=0.453297	major_base=C	major_cov=20/22	major_frequency=5.385e-01	minor_base=A	minor_cov=21/15	new_cov=21/15	polymorphism_frequency=4.615e-01	polymorphism_score=98.1	prediction=polymorphism	ref_cov=20/22	total_cov=41/37
RA	69	.	AE015451	196489	0	T	C	bias_e_value=6044260	bias_p_value=0.977739	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.8	fisher_strand_p_value=0.796558	frequency=2.289e-01	ks_quality_p_value=1	major_base=T	major_cov=34/30	major_frequency=7.711e-01	minor_base=C	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=2.289e-01	polymorphism_score=34.7	prediction=polymorphism	ref_cov=34/30	total_cov=45/41
RA	70	.	AE015451	196495	0	G	C	bias_e_value=4527470	bias_p_value=0.732379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.386494	frequency=4.824e-01	ks_quality_p_value=0.943131	major_base=G	major_cov=21/23	major_frequency=5.176e-01	minor_base=C	minor_cov=24/17	new_cov=24/17	polymorphism_frequency=4.824e-01	polymorphism_score=135.0	prediction=polymorphism	ref_cov=21/23	total_cov=45/42
RA	71	.	AE015451	196579	0	G	A	bias_e_value=6019700	bias_p_value=0.973767	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.8	fisher_strand_p_value=1	frequency=3.647e-01	ks_quality_p_value=0.779866	major_base=G	major_cov=29/25	major_frequency=6.353e-01	minor_base=A	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=3.647e-01	polymorphism_score=75.9	prediction=polymorphism	ref_cov=29/25	total_cov=46/40
RA	72	.	AE015451	196879	0	G	A	bias_e_value=3652010	bias_p_value=0.590761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.7	fisher_strand_p_value=0.251134	frequency=3.175e-01	ks_quality_p_value=0.97889	major_base=G	major_cov=45/41	major_frequency=6.825e-01	minor_base=A	minor_cov=16/24	new_cov=16/24	polymorphism_frequency=3.175e-01	polymorphism_score=86.9	prediction=polymorphism	ref_cov=45/41	total_cov=61/67
RA	73	.	AE015451	197632	0	T	C	bias_e_value=4639300	bias_p_value=0.750469	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.4	fisher_strand_p_value=0.382892	frequency=2.381e-01	ks_quality_p_value=1	major_base=T	major_cov=23/25	major_frequency=7.619e-01	minor_base=C	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=2.381e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=23/25	total_cov=30/36
RA	74	.	AE015451	278742	1	.	A	bias_e_value=6181870	bias_p_value=1	consensus_score=114.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/16	major_frequency=9.167e-01	minor_base=.	minor_cov=1/2	new_cov=17/16	polymorphism_frequency=9.167e-01	polymorphism_score=0.3	prediction=consensus	ref_cov=1/2	total_cov=18/18
RA	75	.	AE015451	307865	1	.	C	bias_e_value=3381230	bias_p_value=0.546959	consensus_score=227.4	fisher_strand_p_value=0.216783	frequency=1	ks_quality_p_value=0.996219	major_base=C	major_cov=29/35	major_frequency=9.697e-01	minor_base=.	minor_cov=2/0	new_cov=29/35	polymorphism_frequency=9.697e-01	polymorphism_score=-1.8	prediction=consensus	ref_cov=2/0	total_cov=31/35
RA	76	.	AE015451	336124	1	.	T	consensus_score=165.6	frequency=1	major_base=T	major_cov=21/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	77	.	AE015451	353067	0	A	G	consensus_score=77.1	frequency=1	major_base=G	major_cov=9/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/14
RA	78	.	AE015451	441326	0	G	.	bias_e_value=5753020	bias_p_value=0.930627	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.6	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.651439	major_base=G	major_cov=20/22	major_frequency=7.500e-01	minor_base=.	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=2.500e-01	polymorphism_score=47.4	prediction=polymorphism	ref_cov=20/22	total_cov=26/31
RA	79	.	AE015451	499203	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=106.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=15/17	major_frequency=9.697e-01	minor_base=.	minor_cov=0/1	new_cov=15/17	polymorphism_frequency=9.697e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	80	.	AE015451	699722	0	A	G	bias_e_value=2740460	bias_p_value=0.443305	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.4	fisher_strand_p_value=0.373501	frequency=5.821e-01	ks_quality_p_value=0.414037	major_base=G	major_cov=35/43	major_frequency=5.821e-01	minor_base=A	minor_cov=20/36	new_cov=35/43	polymorphism_frequency=5.821e-01	polymorphism_score=162.3	prediction=polymorphism	ref_cov=20/36	total_cov=57/79
RA	81	.	AE015451	1070246	1	.	G	bias_e_value=5087480	bias_p_value=0.822967	consensus_score=69.2	fisher_strand_p_value=0.481884	frequency=1	ks_quality_p_value=0.970152	major_base=G	major_cov=11/11	major_frequency=9.167e-01	minor_base=.	minor_cov=0/2	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=0/2	total_cov=11/13
RA	82	.	AE015451	1070246	2	.	A	bias_e_value=4842890	bias_p_value=0.783401	consensus_score=61.3	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.875898	major_base=A	major_cov=11/10	major_frequency=9.130e-01	minor_base=.	minor_cov=0/2	new_cov=11/10	polymorphism_frequency=9.130e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=0/2	total_cov=11/13
RA	83	.	AE015451	1124554	1	.	T	bias_e_value=6109330	bias_p_value=0.988266	consensus_score=24.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.850768	major_base=T	major_cov=9/0	major_frequency=8.182e-01	minor_base=.	minor_cov=2/0	new_cov=9/0	polymorphism_frequency=8.182e-01	polymorphism_score=2.2	prediction=consensus	ref_cov=2/0	total_cov=11/0
RA	84	.	AE015451	1124567	0	G	.	bias_e_value=2861200	bias_p_value=0.462837	consensus_score=15.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.165299	major_base=.	major_cov=8/0	major_frequency=8.000e-01	minor_base=G	minor_cov=2/0	new_cov=8/0	polymorphism_frequency=8.000e-01	polymorphism_score=6.7	prediction=consensus	ref_cov=2/0	total_cov=11/0
RA	85	.	AE015451	1126645	1	.	C	bias_e_value=4113630	bias_p_value=0.665434	consensus_score=97.9	fisher_strand_p_value=0.310345	frequency=1	ks_quality_p_value=0.978076	major_base=C	major_cov=20/8	major_frequency=9.655e-01	minor_base=.	minor_cov=0/1	new_cov=20/8	polymorphism_frequency=9.655e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=20/9
RA	86	.	AE015451	1327121	0	C	T	bias_e_value=2495470	bias_p_value=0.403675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.0	fisher_strand_p_value=1	frequency=4.149e-01	ks_quality_p_value=0.134172	major_base=C	major_cov=29/26	major_frequency=5.851e-01	minor_base=T	minor_cov=21/18	new_cov=21/18	polymorphism_frequency=4.149e-01	polymorphism_score=112.7	prediction=polymorphism	ref_cov=29/26	total_cov=51/45
RA	87	.	AE015451	1419548	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=52.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=7/9	major_frequency=9.412e-01	minor_base=.	minor_cov=0/1	new_cov=7/9	polymorphism_frequency=9.412e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/1	total_cov=7/10
RA	88	.	AE015451	1499480	0	C	A	bias_e_value=6124920	bias_p_value=0.990787	consensus_score=69.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.867368	major_base=A	major_cov=11/11	major_frequency=9.565e-01	minor_base=G	minor_cov=1/0	new_cov=11/11	polymorphism_frequency=9.565e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	89	.	AE015451	1499481	0	A	C	bias_e_value=5059260	bias_p_value=0.818402	consensus_score=72.3	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.965052	major_base=C	major_cov=12/10	major_frequency=9.565e-01	minor_base=A	minor_cov=0/1	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=12/11
RA	90	.	AE015451	1499497	1	.	C	consensus_score=81.3	frequency=1	major_base=C	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	91	.	AE015451	1499498	0	T	G	bias_e_value=3468500	bias_p_value=0.561076	consensus_score=80.9	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=0.491573	major_base=G	major_cov=13/10	major_frequency=9.583e-01	minor_base=T	minor_cov=0/1	new_cov=13/10	polymorphism_frequency=9.583e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=0/1	total_cov=13/11
RA	92	.	AE015451	1499506	1	.	C	consensus_score=72.3	frequency=1	major_base=C	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	93	.	AE015451	2038351	0	G	.	bias_e_value=4463660	bias_p_value=0.722057	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=1	frequency=2.941e-01	ks_quality_p_value=0.354426	major_base=G	major_cov=12/0	major_frequency=7.059e-01	minor_base=.	minor_cov=5/0	new_cov=5/0	polymorphism_frequency=2.941e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=12/0	total_cov=17/0
RA	94	.	AE015451	2550125	0	G	A	bias_e_value=5192400	bias_p_value=0.83994	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.6	fisher_strand_p_value=0.797216	frequency=5.968e-01	ks_quality_p_value=0.61534	major_base=A	major_cov=16/21	major_frequency=5.968e-01	minor_base=G	minor_cov=12/13	new_cov=16/21	polymorphism_frequency=5.968e-01	polymorphism_score=64.0	prediction=polymorphism	ref_cov=12/13	total_cov=28/34
RA	95	.	AE015451	2935792	0	G	A	consensus_score=128.8	frequency=1	major_base=A	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	96	.	AE015451	2958523	0	C	T	consensus_score=116.5	frequency=1	major_base=T	major_cov=10/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	97	.	AE015451	3137776	0	T	.	consensus_score=176.9	frequency=1	major_base=.	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	98	.	AE015451	3845703	1	.	G	bias_e_value=5034840	bias_p_value=0.814453	consensus_score=74.1	fisher_strand_p_value=0.481481	frequency=1	ks_quality_p_value=0.948064	major_base=G	major_cov=12/13	major_frequency=9.259e-01	minor_base=A	minor_cov=2/0	new_cov=12/13	polymorphism_frequency=9.259e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=2/0	total_cov=17/13
RA	99	.	AE015451	3951159	0	T	C	bias_e_value=4538410	bias_p_value=0.734149	consensus_score=57.7	fisher_strand_p_value=0.368421	frequency=1	ks_quality_p_value=0.994169	major_base=C	major_cov=12/6	major_frequency=9.474e-01	minor_base=G	minor_cov=0/1	new_cov=12/6	polymorphism_frequency=9.474e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	100	.	AE015451	3951161	0	A	T	consensus_score=62.8	frequency=1	major_base=T	major_cov=12/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	101	.	AE015451	4025384	0	T	C	bias_e_value=5153490	bias_p_value=0.833645	consensus_score=191.5	fisher_strand_p_value=0.482143	frequency=1	ks_quality_p_value=0.999351	major_base=C	major_cov=26/29	major_frequency=9.821e-01	minor_base=A	minor_cov=1/0	new_cov=26/29	polymorphism_frequency=9.821e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/29
RA	102	.	AE015451	4169472	0	T	C	bias_e_value=121422	bias_p_value=0.0196416	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.3	fisher_strand_p_value=0.00296914	frequency=3.077e-01	ks_quality_p_value=0.965014	major_base=T	major_cov=14/13	major_frequency=6.923e-01	minor_base=C	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=3.077e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=14/13	total_cov=26/14
RA	103	.	AE015451	4236779	0	T	G	consensus_score=23.1	deleted=1	frequency=1	major_base=G	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	104	.	AE015451	4348705	0	A	G	bias_e_value=4709390	bias_p_value=0.761806	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.8	fisher_strand_p_value=0.402013	frequency=5.114e-01	ks_quality_p_value=0.982294	major_base=G	major_cov=22/23	major_frequency=5.114e-01	minor_base=A	minor_cov=25/18	new_cov=22/23	polymorphism_frequency=5.114e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=25/18	total_cov=47/43
RA	105	.	AE015451	4348955	0	G	A	bias_e_value=3570860	bias_p_value=0.577634	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.4	fisher_strand_p_value=0.237844	frequency=3.269e-01	ks_quality_p_value=0.994778	major_base=G	major_cov=12/23	major_frequency=6.731e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.269e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=12/23	total_cov=21/31
RA	106	.	AE015451	4586030	0	C	T	consensus_score=36.7	frequency=1	major_base=T	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	107	.	AE015451	4586031	0	T	C	consensus_score=40.8	frequency=1	major_base=C	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	108	.	AE015451	4586033	1	.	G	consensus_score=42.2	frequency=1	major_base=G	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	109	.	AE015451	4586056	1	.	C	consensus_score=45.4	frequency=1	major_base=C	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	110	.	AE015451	4714831	0	C	A	consensus_score=205.9	frequency=1	major_base=A	major_cov=32/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/29
RA	111	.	AE015451	4740805	0	T	.	consensus_score=74.8	frequency=1	major_base=.	major_cov=9/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	112	.	AE015451	4740816	0	T	G	bias_e_value=6181870	bias_p_value=1	consensus_score=52.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=8/8	major_frequency=8.889e-01	minor_base=T	minor_cov=1/1	new_cov=8/8	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=9/9
RA	113	.	AE015451	4740819	0	T	C	bias_e_value=6181870	bias_p_value=1	consensus_score=55.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=9/8	major_frequency=9.444e-01	minor_base=T	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	114	.	AE015451	4740820	0	G	T	bias_e_value=6181870	bias_p_value=1	consensus_score=56.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/8	major_frequency=9.444e-01	minor_base=G	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=9/9
RA	115	.	AE015451	4741228	1	.	C	bias_e_value=6181870	bias_p_value=1	consensus_score=147.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=27/13	major_frequency=9.302e-01	minor_base=.	minor_cov=2/1	new_cov=27/13	polymorphism_frequency=9.302e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=2/1	total_cov=29/14
RA	116	.	AE015451	4741230	0	A	G	bias_e_value=6181870	bias_p_value=1	consensus_score=136.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=27/13	major_frequency=9.302e-01	minor_base=A	minor_cov=2/1	new_cov=27/13	polymorphism_frequency=9.302e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/1	total_cov=29/14
RA	117	.	AE015451	4741232	0	C	T	bias_e_value=6181870	bias_p_value=1	consensus_score=137.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/13	major_frequency=9.535e-01	minor_base=C	minor_cov=1/1	new_cov=28/13	polymorphism_frequency=9.535e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=29/14
RA	118	.	AE015451	4741235	0	C	T	bias_e_value=6181810	bias_p_value=0.99999	consensus_score=146.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99558	major_base=T	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	119	.	AE015451	4741238	0	C	G	bias_e_value=6167060	bias_p_value=0.997604	consensus_score=146.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.931578	major_base=G	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	120	.	AE015451	4741240	0	A	C	bias_e_value=6181570	bias_p_value=0.999951	consensus_score=155.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990083	major_base=C	major_cov=28/14	major_frequency=9.767e-01	minor_base=A	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	121	.	AE015451	4741241	0	C	T	bias_e_value=6179550	bias_p_value=0.999624	consensus_score=143.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.972694	major_base=T	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	122	.	AE015451	4741245	0	A	.	bias_e_value=6179550	bias_p_value=0.999624	consensus_score=194.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.972694	major_base=.	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	123	.	AE015451	4741254	1	.	T	consensus_score=151.6	frequency=1	major_base=T	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	124	.	AE015451	4741258	0	A	G	consensus_score=156.8	frequency=1	major_base=G	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	125	.	AE015451	4741261	0	A	.	consensus_score=204.6	frequency=1	major_base=.	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	126	.	AE015451	4741263	0	A	C	consensus_score=157.6	frequency=1	major_base=C	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	127	.	AE015451	4741272	0	A	G	consensus_score=153.8	frequency=1	major_base=G	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	128	.	AE015451	4741274	0	A	C	consensus_score=152.5	frequency=1	major_base=C	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	129	.	AE015451	4741276	0	G	C	consensus_score=158.2	frequency=1	major_base=C	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	130	.	AE015451	4741278	0	C	T	consensus_score=147.9	frequency=1	major_base=T	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	131	.	AE015451	4741283	1	.	T	consensus_score=145.5	frequency=1	major_base=T	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	132	.	AE015451	4741289	0	C	G	bias_e_value=6181870	bias_p_value=0.999999	consensus_score=148.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998893	major_base=G	major_cov=28/14	major_frequency=9.767e-01	minor_base=T	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	133	.	AE015451	4741292	0	C	T	bias_e_value=6181870	bias_p_value=1	consensus_score=140.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/14	major_frequency=9.767e-01	minor_base=C	minor_cov=1/0	new_cov=28/14	polymorphism_frequency=9.767e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/14
RA	134	.	AE015451	4741294	0	C	G	consensus_score=152.2	frequency=1	major_base=G	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	135	.	AE015451	4741296	0	A	C	consensus_score=155.5	frequency=1	major_base=C	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	136	.	AE015451	4741298	0	C	T	consensus_score=148.0	frequency=1	major_base=T	major_cov=29/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/14
RA	137	.	AE015451	4889556	0	G	A	bias_e_value=5453830	bias_p_value=0.882229	consensus_score=67.4	fisher_strand_p_value=0.555769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/9	major_frequency=8.846e-01	minor_base=G	minor_cov=1/2	new_cov=14/9	polymorphism_frequency=8.846e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/2	total_cov=15/11
RA	138	.	AE015451	5674750	1	.	G	bias_e_value=5299810	bias_p_value=0.857314	consensus_score=168.7	fisher_strand_p_value=0.529796	frequency=1	ks_quality_p_value=0.973686	major_base=G	major_cov=30/18	major_frequency=9.600e-01	minor_base=.	minor_cov=2/0	new_cov=30/18	polymorphism_frequency=9.600e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=2/0	total_cov=33/18
RA	139	.	AE015451	5674753	0	G	C	bias_e_value=6181350	bias_p_value=0.999915	consensus_score=160.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.987024	major_base=C	major_cov=31/18	major_frequency=9.800e-01	minor_base=T	minor_cov=1/0	new_cov=31/18	polymorphism_frequency=9.800e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/18
RA	140	.	AE015451	6013885	0	T	C	consensus_score=115.2	frequency=1	major_base=C	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
MC	141	.	AE015451	207697	216685	1289	1355	left_inside_cov=14	left_outside_cov=15	right_inside_cov=14	right_outside_cov=16
MC	142	.	AE015451	1164572	1165401	0	0	left_inside_cov=0	left_outside_cov=76	right_inside_cov=0	right_outside_cov=74
MC	143	.	AE015451	1551276	1552850	0	0	left_inside_cov=14	left_outside_cov=15	right_inside_cov=14	right_outside_cov=15
MC	144	.	AE015451	1644923	1647396	0	0	left_inside_cov=14	left_outside_cov=15	right_inside_cov=14	right_outside_cov=15
MC	145	.	AE015451	1709370	1712009	0	0	left_inside_cov=0	left_outside_cov=36	right_inside_cov=0	right_outside_cov=35
MC	146	.	AE015451	2032505	2034184	0	0	left_inside_cov=0	left_outside_cov=34	right_inside_cov=0	right_outside_cov=35
MC	147	.	AE015451	3276905	3278207	0	0	left_inside_cov=14	left_outside_cov=16	right_inside_cov=14	right_outside_cov=15
MC	148	.	AE015451	4236761	4239324	0	0	left_inside_cov=14	left_outside_cov=15	right_inside_cov=14	right_outside_cov=15
MC	149	.	AE015451	4892114	4893525	0	0	left_inside_cov=1	left_outside_cov=27	right_inside_cov=0	right_outside_cov=26
MC	150	.	AE015451	5280939	5282410	0	0	left_inside_cov=14	left_outside_cov=15	right_inside_cov=14	right_outside_cov=15
MC	151	.	AE015451	5342745	5344425	0	0	left_inside_cov=0	left_outside_cov=35	right_inside_cov=0	right_outside_cov=34
JC	152	.	AE015451	1	1	AE015451	6181873	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=39	coverage_plus=43	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=300	key=AE015451__1__1__AE015451__6181873__-1__0____301__301__0__0	max_left=299	max_left_minus=299	max_left_plus=289	max_min_left=145	max_min_left_minus=145	max_min_left_plus=136	max_min_right=141	max_min_right_minus=141	max_min_right_plus=137	max_pos_hash_score=600	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.33	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	153	.	AE015451	337790	-1	AE015451	337853	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=2.014e-01	junction_possible_overlap_registers=294	key=AE015451__337790__-1__AE015451__337847__1__6____301__301__0__0	max_left=219	max_left_minus=219	max_left_plus=181	max_min_left=114	max_min_left_minus=114	max_min_left_plus=49	max_min_right=114	max_min_right_minus=76	max_min_right_plus=114	max_pos_hash_score=588	max_right=246	max_right_minus=175	max_right_plus=246	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=2.014e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=6	side_1_possible_overlap_registers=300	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=4
JC	154	.	AE015451	533510	1	AE015451	533506	-1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=4.230e-02	junction_possible_overlap_registers=287	key=AE015451__533497__1__AE015451__533506__-1__13____301__301__1__0	max_left=225	max_left_minus=225	max_left_plus=172	max_min_left=13	max_min_left_minus=13	max_min_left_plus=0	max_min_right=116	max_min_right_minus=62	max_min_right_plus=116	max_pos_hash_score=574	max_right=274	max_right_minus=274	max_right_plus=116	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=4.230e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=13	side_2_possible_overlap_registers=300	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	155	.	AE015451	610901	1	AE015451	812297	-1	0	alignment_overlap=18	coverage_minus=32	coverage_plus=37	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__610883__1__AE015451__812297__-1__18____301__301__1__0	max_left=269	max_left_minus=255	max_left_plus=269	max_min_left=139	max_min_left_minus=134	max_min_left_plus=139	max_min_right=135	max_min_right_minus=135	max_min_right_plus=134	max_pos_hash_score=564	max_right=271	max_right_minus=271	max_right_plus=261	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.16	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=18	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	156	.	AE015451	645757	1	AE015451	1331057	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=7.746e-02	junction_possible_overlap_registers=293	key=AE015451__645757__1__AE015451__1331050__1__7____301__301__0__0	max_left=185	max_left_minus=185	max_left_plus=94	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=586	max_right=280	max_right_minus=109	max_right_plus=280	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=7.746e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.11	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=3
JC	157	.	AE015451	645757	1	AE015451	3809417	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=8.396e-02	junction_possible_overlap_registers=293	key=AE015451__645757__1__AE015451__3809424__-1__7____301__301__0__0	max_left=185	max_left_minus=185	max_left_plus=94	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=586	max_right=280	max_right_minus=109	max_right_plus=280	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=8.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=3
JC	158	.	AE015451	812296	1	AE015451	2436567	-1	0	alignment_overlap=7	coverage_minus=30	coverage_plus=25	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__812296__1__AE015451__2436574__-1__7____301__301__0__1	max_left=286	max_left_minus=286	max_left_plus=279	max_min_left=135	max_min_left_minus=135	max_min_left_plus=124	max_min_right=144	max_min_right_minus=142	max_min_right_plus=144	max_pos_hash_score=586	max_right=286	max_right_minus=286	max_right_plus=271	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.97	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=55
JC	159	.	AE015451	833361	-1	AE015451	6088074	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=3.971e-02	junction_possible_overlap_registers=291	key=AE015451__833361__-1__AE015451__6088065__1__9____301__301__0__0	max_left=183	max_left_minus=183	max_left_plus=177	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=115	max_min_right_minus=103	max_min_right_plus=115	max_pos_hash_score=582	max_right=287	max_right_minus=103	max_right_plus=287	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=3.971e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.00	side_1_overlap=9	side_1_possible_overlap_registers=300	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	160	.	AE015451	1164571	-1	AE015451	1165402	1	-3	alignment_overlap=-3	coverage_minus=24	coverage_plus=47	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__1164571__-1__AE015451__1165402__1__-3__TCA__301__301__0__0	max_left=297	max_left_minus=297	max_left_plus=282	max_min_left=145	max_min_left_minus=136	max_min_left_plus=145	max_min_right=149	max_min_right_minus=144	max_min_right_plus=149	max_pos_hash_score=594	max_right=292	max_right_minus=292	max_right_plus=283	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.17	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=TCA
JC	161	.	AE015451	1531731	-1	AE015451	1531839	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=1.795e-01	junction_possible_overlap_registers=293	key=AE015451__1531731__-1__AE015451__1531832__1__7____301__301__0__0	max_left=175	max_left_minus=175	max_left_plus=97	max_min_left=97	max_min_left_minus=65	max_min_left_plus=97	max_min_right=119	max_min_right_minus=119	max_min_right_plus=0	max_pos_hash_score=586	max_right=251	max_right_minus=229	max_right_plus=251	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=1.795e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.30	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=19	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=4
JC	162	.	AE015451	1709369	-1	AE015451	1712010	1	-7	alignment_overlap=-7	coverage_minus=16	coverage_plus=19	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__1709369__-1__AE015451__1712010__1__-7__CGGCCGC__301__301__0__0	max_left=291	max_left_minus=291	max_left_plus=282	max_min_left=139	max_min_left_minus=139	max_min_left_plus=137	max_min_right=131	max_min_right_minus=119	max_min_right_plus=131	max_pos_hash_score=586	max_right=290	max_right_minus=256	max_right_plus=290	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.57	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=CGGCCGC
JC	163	.	AE015451	1780066	-1	AE015451	1780129	1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=4	flanking_left=301	flanking_right=301	frequency=3.559e-01	junction_possible_overlap_registers=293	key=AE015451__1780066__-1__AE015451__1780122__1__7____301__301__0__0	max_left=271	max_left_minus=198	max_left_plus=271	max_min_left=122	max_min_left_minus=122	max_min_left_plus=1	max_min_right=112	max_min_right_minus=95	max_min_right_plus=112	max_pos_hash_score=586	max_right=281	max_right_minus=172	max_right_plus=281	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.10	new_junction_read_count=6	polymorphism_frequency=3.559e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.16	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=6
JC	164	.	AE015451	2032504	-1	AE015451	2034185	1	-8	alignment_overlap=-8	coverage_minus=13	coverage_plus=20	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__2032504__-1__AE015451__2034185__1__-8__GCGGCCGC__301__301__0__0	max_left=284	max_left_minus=284	max_left_plus=275	max_min_left=121	max_min_left_minus=88	max_min_left_plus=121	max_min_right=136	max_min_right_minus=60	max_min_right_plus=136	max_pos_hash_score=584	max_right=291	max_right_minus=291	max_right_plus=268	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.54	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=GCGGCCGC
JC	165	.	AE015451	2472115	-1	AE015451	2472313	1	0	alignment_overlap=7	coverage_minus=12	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=4.307e-01	junction_possible_overlap_registers=293	key=AE015451__2472115__-1__AE015451__2472306__1__7____301__301__0__0	max_left=272	max_left_minus=272	max_left_plus=190	max_min_left=108	max_min_left_minus=108	max_min_left_plus=107	max_min_right=139	max_min_right_minus=139	max_min_right_plus=104	max_pos_hash_score=586	max_right=277	max_right_minus=277	max_right_plus=237	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.24	new_junction_read_count=15	polymorphism_frequency=4.307e-01	pos_hash_score=15	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=15
JC	166	.	AE015451	2957080	-1	AE015451	2957165	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=2.082e-01	junction_possible_overlap_registers=295	key=AE015451__2957080__-1__AE015451__2957160__1__5____301__301__0__0	max_left=245	max_left_minus=127	max_left_plus=245	max_min_left=127	max_min_left_minus=127	max_min_left_plus=17	max_min_right=112	max_min_right_minus=0	max_min_right_plus=112	max_pos_hash_score=590	max_right=270	max_right_minus=216	max_right_plus=270	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.10	new_junction_read_count=6	polymorphism_frequency=2.082e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.33	side_1_overlap=5	side_1_possible_overlap_registers=300	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=5
JC	167	.	AE015451	4808174	1	AE015451	5988935	-1	0	alignment_overlap=35	coverage_minus=3	coverage_plus=8	flanking_left=301	flanking_right=301	frequency=4.740e-01	junction_possible_overlap_registers=265	key=AE015451__4808174__1__AE015451__5988970__-1__35____301__301__0__0	max_left=259	max_left_minus=242	max_left_plus=259	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=61	max_min_right_plus=67	max_pos_hash_score=530	max_right=67	max_right_minus=61	max_right_plus=67	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.25	new_junction_read_count=14	polymorphism_frequency=4.740e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=35	side_1_possible_overlap_registers=300	side_1_read_count=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=11
JC	168	.	AE015451	4808176	-1	AE015451	4808280	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=2.520e-01	junction_possible_overlap_registers=292	key=AE015451__4808176__-1__AE015451__4808272__1__8____301__301__0__0	max_left=288	max_left_minus=115	max_left_plus=288	max_min_left=115	max_min_left_minus=115	max_min_left_plus=0	max_min_right=5	max_min_right_minus=0	max_min_right_plus=5	max_pos_hash_score=584	max_right=265	max_right_minus=265	max_right_plus=5	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.08	new_junction_read_count=5	polymorphism_frequency=2.520e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=8	side_1_possible_overlap_registers=300	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=4
JC	169	.	AE015451	4808179	-1	AE015451	5988765	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=7	flanking_left=301	flanking_right=301	frequency=7.353e-01	junction_possible_overlap_registers=288	key=AE015451__4808179__-1__AE015451__5988753__1__12____301__301__0__0	max_left=277	max_left_minus=261	max_left_plus=277	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=54	max_min_right_minus=54	max_min_right_plus=52	max_pos_hash_score=576	max_right=152	max_right_minus=54	max_right_plus=152	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.20	new_junction_read_count=12	polymorphism_frequency=7.353e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=12	side_1_possible_overlap_registers=300	side_1_read_count=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	170	.	AE015451	4892113	-1	AE015451	4893526	1	-8	alignment_overlap=-8	coverage_minus=11	coverage_plus=11	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__4892113__-1__AE015451__4893526__1__-8__GCGGCCGC__301__301__0__0	max_left=289	max_left_minus=273	max_left_plus=289	max_min_left=108	max_min_left_minus=108	max_min_left_plus=84	max_min_right=132	max_min_right_minus=132	max_min_right_plus=129	max_pos_hash_score=584	max_right=249	max_right_minus=249	max_right_plus=237	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.39	new_junction_read_count=24	polymorphism_frequency=9.801e-01	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=GCGGCCGC
JC	171	.	AE015451	4892113	-1	AE015451	4893627	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=4.252e-01	junction_possible_overlap_registers=295	key=AE015451__4892113__-1__AE015451__4893627__1__-5__GCGGC__301__301__0__0	max_left=251	max_left_minus=102	max_left_plus=251	max_min_left=139	max_min_left_minus=102	max_min_left_plus=139	max_min_right=38	max_min_right_minus=0	max_min_right_plus=38	max_pos_hash_score=590	max_right=194	max_right_minus=194	max_right_plus=158	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=4.252e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.16	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GCGGC
JC	172	.	AE015451	4896440	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=23	coverage_plus=20	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__4896440__1__AE015451__5756790__1__18____301__301__0__1	max_left=278	max_left_minus=266	max_left_plus=278	max_min_left=134	max_min_left_minus=131	max_min_left_plus=134	max_min_right=140	max_min_right_minus=140	max_min_right_plus=133	max_pos_hash_score=564	max_right=261	max_right_minus=261	max_right_plus=206	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=43
JC	173	.	AE015451	4896441	-1	AE015451	5220211	-1	0	alignment_overlap=7	coverage_minus=25	coverage_plus=26	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__4896441__-1__AE015451__5220218__-1__7____301__301__0__1	max_left=292	max_left_minus=292	max_left_plus=288	max_min_left=141	max_min_left_minus=132	max_min_left_plus=141	max_min_right=146	max_min_right_minus=136	max_min_right_plus=146	max_pos_hash_score=586	max_right=281	max_right_minus=277	max_right_plus=281	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=51
JC	174	.	AE015451	4969528	1	AE015451	4969524	-1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=301	flanking_right=301	frequency=3.739e-02	junction_possible_overlap_registers=287	key=AE015451__4969528__1__AE015451__4969537__-1__13____301__301__0__0	max_left=281	max_left_minus=281	max_left_plus=53	max_min_left=61	max_min_left_minus=61	max_min_left_plus=53	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_pos_hash_score=574	max_right=235	max_right_minus=227	max_right_plus=235	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=3.739e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=13	side_1_possible_overlap_registers=300	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=3
JC	175	.	AE015451	4980585	-1	AE015451	4980586	1	-3	alignment_overlap=-3	coverage_minus=22	coverage_plus=22	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__4980585__-1__AE015451__4980586__1__-3__GGC__301__301__0__0	max_left=277	max_left_minus=264	max_left_plus=277	max_min_left=146	max_min_left_minus=145	max_min_left_plus=146	max_min_right=134	max_min_right_minus=105	max_min_right_plus=134	max_pos_hash_score=594	max_right=294	max_right_minus=267	max_right_plus=294	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.77	new_junction_read_count=48	polymorphism_frequency=9.798e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=44	unique_read_sequence=GGC
JC	176	.	AE015451	5342744	-1	AE015451	5344426	1	-8	alignment_overlap=-8	coverage_minus=18	coverage_plus=15	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=292	key=AE015451__5342744__-1__AE015451__5344426__1__-8__GCGGCCGC__301__301__0__0	max_left=281	max_left_minus=227	max_left_plus=281	max_min_left=143	max_min_left_minus=140	max_min_left_plus=143	max_min_right=127	max_min_right_minus=126	max_min_right_plus=127	max_pos_hash_score=584	max_right=282	max_right_minus=265	max_right_plus=282	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.54	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33	unique_read_sequence=GCGGCCGC
JC	177	.	AE015451	5513317	1	AE015451	5756808	1	0	alignment_overlap=18	coverage_minus=33	coverage_plus=43	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5513317__1__AE015451__5756790__1__18____301__301__0__1	max_left=278	max_left_minus=278	max_left_plus=262	max_min_left=139	max_min_left_minus=132	max_min_left_plus=139	max_min_right=141	max_min_right_minus=139	max_min_right_plus=141	max_pos_hash_score=564	max_right=270	max_right_minus=270	max_right_plus=268	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.42	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=76
JC	178	.	AE015451	5513318	-1	AE015451	5758121	-1	0	alignment_overlap=7	coverage_minus=26	coverage_plus=30	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5513318__-1__AE015451__5758128__-1__7____301__301__0__1	max_left=291	max_left_minus=266	max_left_plus=291	max_min_left=139	max_min_left_minus=139	max_min_left_plus=137	max_min_right=146	max_min_right_minus=123	max_min_right_plus=146	max_pos_hash_score=586	max_right=287	max_right_minus=287	max_right_plus=267	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.94	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=56
JC	179	.	AE015451	5545080	1	AE015451	5545666	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=2	flanking_left=301	flanking_right=301	frequency=7.411e-01	junction_possible_overlap_registers=297	key=AE015451__5545080__1__AE015451__5545669__-1__3____301__301__0__1	max_left=293	max_left_minus=284	max_left_plus=293	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=7	max_pos_hash_score=594	max_right=36	max_right_minus=36	max_right_plus=7	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=2.18	new_junction_read_count=136	polymorphism_frequency=7.411e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=3	side_1_possible_overlap_registers=300	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	180	.	AE015451	5555608	-1	AE015451	5555609	1	-3	alignment_overlap=-3	coverage_minus=28	coverage_plus=24	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=297	key=AE015451__5555608__-1__AE015451__5555609__1__-3__GCC__301__301__0__0	max_left=294	max_left_minus=294	max_left_plus=264	max_min_left=146	max_min_left_minus=146	max_min_left_plus=141	max_min_right=140	max_min_right_minus=126	max_min_right_plus=140	max_pos_hash_score=594	max_right=290	max_right_minus=281	max_right_plus=290	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.85	new_junction_read_count=53	polymorphism_frequency=9.469e-01	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=GCC
JC	181	.	AE015451	5681415	-1	AE015451	5681416	1	-4	alignment_overlap=-4	coverage_minus=27	coverage_plus=22	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=296	key=AE015451__5681415__-1__AE015451__5681416__1__-4__CGGG__301__301__0__0	max_left=285	max_left_minus=285	max_left_plus=270	max_min_left=144	max_min_left_minus=137	max_min_left_plus=144	max_min_right=146	max_min_right_minus=146	max_min_right_plus=136	max_pos_hash_score=592	max_right=292	max_right_minus=292	max_right_plus=277	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.85	new_junction_read_count=53	polymorphism_frequency=9.817e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=300	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=49	unique_read_sequence=CGGG
JC	182	.	AE015451	5984436	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=31	coverage_plus=32	flanking_left=301	flanking_right=301	frequency=6.644e-01	junction_possible_overlap_registers=282	key=AE015451__5984436__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=279	max_left_minus=279	max_left_plus=277	max_min_left=140	max_min_left_minus=138	max_min_left_plus=140	max_min_right=135	max_min_right_minus=122	max_min_right_plus=135	max_pos_hash_score=564	max_right=257	max_right_minus=257	max_right_plus=247	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.13	new_junction_read_count=67	polymorphism_frequency=6.644e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=63
JC	183	.	AE015451	5988782	-1	AE015451	6039188	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=3	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=299	key=AE015451__5988782__-1__AE015451__6039188__-1__-1__G__301__301__0__1	max_left=125	max_left_minus=0	max_left_plus=125	max_min_left=125	max_min_left_minus=0	max_min_left_plus=125	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=598	max_right=276	max_right_minus=0	max_right_plus=276	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3	unique_read_sequence=G
JC	184	.	AE015451	5988787	1	AE015451	6037870	1	0	alignment_overlap=7	coverage_minus=16	coverage_plus=29	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=293	key=AE015451__5988787__1__AE015451__6037863__1__7____301__301__0__1	max_left=263	max_left_minus=263	max_left_plus=262	max_min_left=142	max_min_left_minus=138	max_min_left_plus=142	max_min_right=136	max_min_right_minus=136	max_min_right_plus=133	max_pos_hash_score=586	max_right=286	max_right_minus=286	max_right_plus=279	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.76	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45
JC	185	.	AE015451	5988788	-1	AE015451	6039183	-1	0	alignment_overlap=18	coverage_minus=31	coverage_plus=37	flanking_left=301	flanking_right=301	frequency=1	junction_possible_overlap_registers=282	key=AE015451__5988788__-1__AE015451__6039201__-1__18____301__301__0__1	max_left=265	max_left_minus=249	max_left_plus=265	max_min_left=131	max_min_left_minus=124	max_min_left_plus=131	max_min_right=139	max_min_right_minus=139	max_min_right_plus=133	max_pos_hash_score=564	max_right=271	max_right_minus=237	max_right_plus=271	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.15	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=300	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=68
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