New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 178006638 (0.340)9 (0.080) 9/586 6.5 19.5% intergenic (+25/+81) PP_1587/dapC NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative
?AE015451 1780129 = 37 (0.340)intergenic (+88/+18) PP_1587/dapC NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGGATGCTGCGCAGGCAACGTTGGCGACCGAGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1779765‑1780066
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTACCACGGTTACATGCTGGGCTTCGAACAGGTCGCGGGTGAACTCGGCATCGTCGCCCGGTACCTTGGCCCACAGGTAGAAACTGCCGTCCGGGCGCTG  >  AE015451/1780129‑1780380
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
gcgGGATGCTGCGCAGGCAACGTTGGCGACCGGGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGC                                                                                                                                                                                                                                                               <  2:63228/298‑1
           tGCAGGCAACGTTGCCGACCGAGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAA                                                                                                                                                                                                                                                    <  4:258165/300‑1
            GCAGGCAACGTTGGCGACCGAGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTAGGGCAAGAAGACCCTAACAGGGCCCTTGCCGGGCGggcacgggaaa                                                                                                                                                                                                                                                   >  2:258120/1‑290
                     GTTGGCGACCGAGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCCGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTACAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGcggtccccgtcacctccggtatc                                                                                                                                                                                                                                          >  2:179639/1‑278
                                                             cgctATGAGCTGGAAAGCTCCGACGACCGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTC                                                                                                                                                                                                  <  2:542411/297‑1
                                                                GATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAT                                                                                                                                                                                               <  3:338155/301‑1
                                                                 ATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCagat                                                                                                                                                                                              >  4:542549/1‑297
                                                                                             TGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGATTCGATGCATTCGGCCAGCGGTTGAAACAGTGCCc                                                                                                                                                                  >  1:215257/1‑300
                                                                                                    AAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAC                                                                                                                                                           <  3:215259/301‑1
                                                                                                                                                                                              CGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGGTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCGGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCTGGGTTCACCCCATCCACTTCACGCGACAGGTACCAACCCGGTACCACGGTTACATGCTGGGCTTCGAACCGGTCGCG                                                                 >  3:418219/1‑301
                                                                                                                                                                                                                                                            gggGAACCGGGGTTCAGTCAAGATCAGCCTATCCAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTACCACGGTTACATGCTGGGCTTCGAACAGGTCGCGGGTGAACTCGGCATCGTCGCCCGGTACCTTGGCCCACAGGTAGAAACTGCCGTCCGGGCGCT   <  1:418209/298‑1
                                                                                                                                                                                                                                                             GCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTACCACGGTTACATGCTGGGCTTCGAACAGGTCGCGGGTGAACTCGGCATCGTCGCCCGGTACCTTGGCCCACAGGTAGAAACTGCCGTCCGGGCGCTG  >  4:504105/1‑301
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
GCAGGATGCTGCGCAGGCAACGTTGGCGACCGAGTTGAAGGCGCGCTTGATGGCTGAATACCGGGATGAGCTGGAAAGCTACGACGACAGTGCTGAAGCCAAAGCCCTGGCCGCACAGATGGACTTGCTGGAGCGGCGTTTACGCTTGCGTGCCCTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1779765‑1780066
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGGTACCACGGTTACATGCTGGGCTTCGAACAGGTCGCGGGTGAACTCGGCATCGTCGCCCGGTACCTTGGCCCACAGGTAGAAACTGCCGTCCGGGCGCTG  >  AE015451/1780129‑1780380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.