New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5696567	20 (0.180)	13 (0.120)	11/584	5.9	52.6%	intergenic (+19/‑193)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
	?	AE015451	5696629 =	4 (0.040)					intergenic (+81/‑131)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
Rejected: Coverage evenness skew score above cutoff.

TTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGC  >  AE015451/5696267‑5696665                                                                                                                                                                                                                                                                                                              |                                                                                                   ggcctgctgcAACCGGCCATGACCCGGGGGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCa                                                                                                    <  2:690505/298‑1 (MQ=255)   gctgctgcCACTGGCCATGACCCTGGTGCAGGACGGCTGG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACg                                                                                                  <  1:574950/301‑1 (MQ=255)     tgctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGGTATACCTTGTTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTATCGGGCACGcc                                                                                                >  4:374255/1‑301 (MQ=255)       ctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCg                                                                                              <  4:703675/301‑1 (MQ=255)            aCTGGCCATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTccc                                                                                         >  3:620636/1‑301 (MQ=255)               ggCCATCACCCTGCTGCAGGGCGG‑CTGCCTCGCCCTGCGGACCTTGCGGGCCCGCCGGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCAGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCATGCCCGcgaatgcc                                                                                      <  4:419813/301‑8 (MQ=255)                  cATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCCCGGTCCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTTAGTACCATGCTTATCGGGCGCGCCCGCCCCCCCAggc                                                                                   >  2:217184/1‑300 (MQ=255)                       cccTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGATCCCACAGGATcacc                                                                              >  1:446153/1‑301 (MQ=255)                           gctGCAGGACGCCCTG‑CTCGCCCTGCCGACCTTGCTGGCCCGCCGGAGCAGCTGCCCGGCTGCCGCCCGGCGCCTGCCGGCGTGGCAGCTGAAAGTGGGTGGCGCCGCCGCCCTGGTTCTGTTCGCCCCGCAAGCGTCCACCGTGGCTCGCGACGAATTGTCCTCCCGTGGCGACAACTCCCCGTCCATCGGCCACTGCCTGCCGGGCGCGGTGCGTCATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCATGCCCGcgaatgccttcacatagtcc                                                                          <  4:7299/299‑20 (MQ=255)                            cttccgatctgCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGCCGAGCGGCCCGGCTGCCGCCCGGCGCCGGCCAGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGCCCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTTCCGTGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCATGCCCGcgaatgccttcacatagtccc                                                                         <  1:582810/291‑21 (MQ=255)                             ggCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAAtt                                                                        <  3:261832/300‑1 (MQ=255)                                     ggCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCTACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCa                                                                >  4:45628/1‑301 (MQ=255)                                      gCCTG‑CTCGACCTGCCGCCCTTGTCGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                               <  1:184457/301‑1 (MQ=255)                                      gCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                               <  3:446165/301‑1 (MQ=255)                                      gCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                               >  3:582825/1‑301 (MQ=255)                                         gg‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAtgtg                                                            <  1:134314/300‑1 (MQ=255)                                         cg‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAtgtg                                                            <  4:217222/300‑1 (MQ=255)                                                    gCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCtgt                                                  >  1:629061/1‑301 (MQ=255)                                                       gACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTggg                                               <  3:629076/301‑1 (MQ=255)                                                        ccctggCTGGCCCGCCGGAGCAGCTGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGTTGAGCTGAAAGTGGGTGGCGCGGCCTACCTGGTGCTGTTCGACCCGCAAGCGCCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCTGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGa                                              <  1:281514/296‑1 (MQ=255)                                                                             agcGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGcc                         >  4:171294/1‑301 (MQ=255)                                                                                             cccTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATACCCACAATTCCAAGGCATGTGGGCACCCTGTGGGCGCGGGCATGCCCGCGAATCCCTTCACAtcattccccc         >  2:456424/1‑292 (MQ=255)                                                                                                    ccTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTTCCCCCGCCAAgg  >  3:114474/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                                              |                                                                                                   TTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTG‑CTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGC  >  AE015451/5696267‑5696665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.