Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	1551289	1552878	1590	29 [27]	[27] 28	pykA	pykA

GCGTGGTTGCTGACAAGGTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACC  >  AE015451/1550988‑1551387                                                                                                                                                                                                                                                                                                             |                                                                                                    ttccgatctcTGACAAGGTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGaa                                                                                                     <  3:285634/292‑1 (MQ=255)     ggTTGCTGACAAGGTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCgg                                                                                                 >  4:629911/1‑301 (MQ=255)          cTGACAAGGTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGaaagatcggaa                                                                                            >  1:285628/1‑292 (MQ=255)            aaCAAGTTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCtttt                                                                                          <  1:518714/300‑1 (MQ=255)                 ggTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTAtt                                                                                     <  3:278078/301‑1 (MQ=255)                   tCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACTGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGc                                                                                   <  1:627036/301‑1 (MQ=255)                      agcaagGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGt                                                                                >  3:563546/1‑301 (MQ=255)                           ggTTCGGGCAACTTCGGCTAAAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCgggg                                                                           <  1:288174/301‑1 (MQ=255)                              ccGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCct                                                                        <  1:52319/300‑1 (MQ=255)                                 gtgctcttccgatctaaCGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCtt                                                                     <  3:3907/286‑1 (MQ=255)                                  gCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAACCCCCCGGTTCGCAAGAACCGGGGCTTTTTTATTGCTTTCgggtcccattc                                                                    >  2:571743/1‑293 (MQ=255)                                    aaCTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgc                                                                  >  3:6572/1‑301 (MQ=255)                                    aaCTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgc                                                                  >  3:232687/1‑301 (MQ=255)                                      cTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGACTTACCCCCCTGCACCATCACAAAGCCCCGGTTAGACAGACACGGGGCTTTTTAGTTTCTGTCGGGGcttcttgacta                                                                >  2:376044/1‑296 (MQ=255)                                          ggCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGcacc                                                            >  1:345512/1‑300 (MQ=255)                                          ggCTAAAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGcaca                                                            <  1:249181/301‑1 (MQ=255)                                                aaCGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCttagatcggaagagcgg                                                      >  1:3907/1‑286 (MQ=255)                                                    cttccgatcttGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCt                                                  <  1:38256/291‑1 (MQ=255)                                                       cTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTTCGCTTgg                                               >  2:386488/1‑300 (MQ=255)                                                         aCCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAgg                                             >  3:176289/1‑300 (MQ=255)                                                              tGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCtagatcggaag                                        >  3:38257/1‑291 (MQ=255)                                                                        gACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGTCCTCTTCGCAGCACAAGGCTGCGCTTGCGCCGTGTTCTTTGAAAc                              >  2:426127/1‑301 (MQ=255)                                                                           aTGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACCAGGCTGCGCTTGATCCTTGTTCtgtgtaccgat                           >  2:159120/1‑294 (MQ=255)                                                                               tCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGa                       <  4:86317/301‑1 (MQ=255)                                                                                 gagaTGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGagg                     >  3:168683/1‑299 (MQ=255)                                                                                     tGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGagtttaa                 >  1:55389/1‑295 (MQ=255)                                                                                         tATCCTGGACCCAGCCAAGGTCACTCACTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGGTAAACGGGTGGAttttaaactc             >  2:649240/1‑292 (MQ=255)                                                                                                 aCCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCCCACGGCTGCGCTTGAACCTTGTTCTTTTAAACGAGTggcgtttaaacataggaggtt     >  2:704439/1‑282 (MQ=255)                                                                                                    cAGCCAAGGTCACGCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGAGATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGagtttaaactcaggaggttacg  <  1:629955/301‑22 (MQ=255)                                                                                                                                                                                                                                                                                                             |                                                                                                    GCGTGGTTGCTGACAAGGTCAAGCAAGGTTCGGGCAACTTCGGCTACAACGCCGCTACCGGTGAATACGGCGACATGATCGAGATGGGTATCCTGGACCCAGCCAAGGTCACTCGCTCGGCGCTGCAAGCTGCTGCTTCGATCGGCGGTCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACC  >  AE015451/1550988‑1551387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑