New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5696567	15 (0.210)	5 (0.070)	5/584	5.4	32.7%	intergenic (+19/‑193)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
	?	AE015451	5696629 =	6 (0.090)					intergenic (+81/‑131)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
Rejected: Coverage evenness skew score above cutoff.

CCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCC  >  AE015451/5696365‑5696915                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                               ccTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTACCCCCGCCAAgc                                                                                                                                                                                                                                                            >  1:35656/1‑301 (MQ=255)   tGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGACCGCGAATGCCTTCACATAGTCCACCCGCCCAgccc                                                                                                                                                                                                                                                          >  3:213855/1‑299 (MQ=255)               aGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATcc                                                                                                                                                                                                                                              >  1:266708/1‑301 (MQ=255)                            tggCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCACCCCGCCAAgccccaccctccaccctctccctctacaa                                                                                                                                                                                                                                 >  4:341818/1‑274 (MQ=255)                                                                                                                                                                                                         cgacgctcttccgttccggATCACCACAATGCCAAGGCATGTGGTAACCCTGGGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTgc                                                    <  1:97210/284‑1 (MQ=255)                                                                                                                                                                                                                                               aTGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGcc              <  3:466232/301‑1 (MQ=255)                                                                                                                                                                                                                                                           gggcttaGCGGGCATGCCCGCGAATGCCTTCACATAGCCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGcc  <  3:332713/295‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                               CCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCC  >  AE015451/5696365‑5696915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.