New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 740858	119 (1.120)	4 (0.040)	4/600	8.4	3.1%	coding (16/411 nt)	pilA	Fimbrial protein
	?	AE015451	= 779333	134 (1.270)					coding (2383/2433 nt)	PP_0669	Outer membrane ferric siderophore receptor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGCGCCGTTGGCGTCGGTGCCGTGCCAGTGGTAGAGAAGTGAAGATGAAGTCATGCAAAGGTCCTTGTTCAGCCCCGGCGACAAGCCTGGAAACAGCTTGCCGCGTCCATGCAAGGGCACGCGTCCGTGATGCTCACTAGAGTAGTTCAGCGAAGATGACGCCCGTGCGGGCAGGGGTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/740571‑740858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTCCAGTAATTGGGGTTACCCAAGGTCTGGTAGTACTTTTTGTCAAACACGTTGTCCAGGTTGTACTGCACTTCAAGACGCTTGTTGATCTCGTAGATCGCATGCAGGTTCGTCAGGTGGTATGCGTCCTGCTGGATCTTGTAGTCTTCGCCAACCTCAGTCTGGGTCA  <  AE015451/779333‑779163                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCGCGCCGTTGGCGTCGGTGCCGTGCCAGTGGTAGAGAAGTGAAGATGAAGTCATGCAAAGGTCCTTGTTCAGCCCCGGCGACAAGCCTGGAAACAGCTTGCCGCGTCCATGCAAGGGCACGCGTCCGTGATGCTCACTAGAGTAGTTCAGCGAAGATGACGCCCGTGCGGGCAGGGGTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCGAGatcggaagagc                                                                                                                                                                >  3:45207/1‑290      GCCGTTGGCGTCGGTGCCGTGCCAGTGGTAGAGAAGTGAAGATGAAGTCATGCAAAGGTCCTTGTTCAGCCCCGGCGACAAGCCTGGAAACAGCTTGCCGCGTCCATGCAAGGGCACGCGTCCGTGATGCTCACTAGAGTAGTTCAGCGAAGATGACGCCCGTGCGGGCAGGGGTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCGAGatcggaagagcacacg                                                                                                                                                           >  4:73224/1‑285                                                                                                           GTCCATGCAAGGGCACGCGTCCGTGATGCTCACTAGAGTAGTTCAGCGAAGATGACGCCCGTGCGGGCAGGGGTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCGAGTTCCAGTAATTGGGGTTACCCAAGGTCTGGTAGTACTTTTTGTCAAACACGTTGTCCAGGTTGTACTGCACTTCAAGACGCTTGTTGATCTCGTAGATCGCATGCAGGTTAGTCAGG                                                      >  2:369846/1‑301                                                                                                                                                               TGACGCCCGTGCGGGCAGGGTTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCGAGTTCCAGTAATTGGGGTTACCCAAGGTCTGGTAGTACTTTTTGTCAAACACGTTGTCCAGGTTGTACTGCACTTCAAGACGCTTGTTGATCTCGTAGATCGCATGCAGGTTCGTCAGGTGGTATGCGTCCTGCTGGATCTTGTAGTCTTCGCCAACCTCAGTCTGGGTCA  <  4:369949/301‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCGCGCCGTTGGCGTCGGTGCCGTGCCAGTGGTAGAGAAGTGAAGATGAAGTCATGCAAAGGTCCTTGTTCAGCCCCGGCGACAAGCCTGGAAACAGCTTGCCGCGTCCATGCAAGGGCACGCGTCCGTGATGCTCACTAGAGTAGTTCAGCGAAGATGACGCCCGTGCGGGCAGGGGTGACAAAAGGTGTCTGTTCAGGCCTACTGCGCCGCTGCCGGTTGGGGCGCAACTGACCTCAATGTGTAAGCGAATCAAAAAGGAACTACGTTCATGAAAGGGCAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/740571‑740858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTCCAGTAATTGGGGTTACCCAAGGTCTGGTAGTACTTTTTGTCAAACACGTTGTCCAGGTTGTACTGCACTTCAAGACGCTTGTTGATCTCGTAGATCGCATGCAGGTTCGTCAGGTGGTATGCGTCCTGCTGGATCTTGTAGTCTTCGCCAACCTCAGTCTGGGTCA  <  AE015451/779333‑779163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.