Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3276920	3278209	1290	27 [26]	[26] 27	ampC	ampC

CAAGTGCAGCCAGACGTGGGCGGAGCATGGTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGTTCCCGCTGCTGGGCCTGGCGTTCAAACCTCTGTT  >  AE015451/3278093‑3278510                                                                                                                      |                                                                                                                                                                                                                                                                                                             tggcatcagcacgcgtaccggttctagaggTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGgcgc                                                                                                                       >  3:288127/29‑301 (MQ=255)            cgcgtaacggttttaggggTGAGTCCTTGTGTCGAGCGTGTCCGTTGAGCGATAACACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTccc                                                                                                            <  2:297142/284‑1 (MQ=255)              cacgacgctcttccgatctaGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGt                                                                                                          <  2:687734/282‑1 (MQ=255)               gtaccggttctagaggTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTg                                                                                                         <  4:289971/287‑1 (MQ=255)                    tgttctagaggttaGTCCTTTTGTGTAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATTGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGcc                                                                                                    <  3:553646/288‑1 (MQ=255)                      ttctagaggTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCcat                                                                                                  >  3:376602/8‑301 (MQ=255)                            aggTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAGGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATtgc                                                                                            >  1:601924/2‑301 (MQ=255)                              gTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATtgccg                                                                                          <  1:376592/301‑1 (MQ=255)                                 aGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGtagatcggaagagcacacgt                                                                                       >  4:687969/1‑282 (MQ=255)                                     cTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGACAAACTGTCCCGTGAAGCCATCATtgccggtgccgg                                                                                   >  1:388535/1‑301 (MQ=255)                                              gggtgggccGTTGGGGGATACCACTCGGGGTTACGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGGCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGgcg                                                                          <  2:660299/294‑1 (MQ=255)                                                 gtgtCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCt                                                                       <  2:714921/301‑1 (MQ=255)                                                     ccttccgatcttACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCAc                                                                   <  2:880507/290‑1 (MQ=255)                                                             cGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGgt                                                           >  4:455741/1‑301 (MQ=255)                                                                tACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCAcagatcggaaga                                                        >  4:880819/1‑290 (MQ=255)                                                                  ctcttccgatctCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTtct                                                      <  2:656546/290‑1 (MQ=255)                                                                        ggggTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTa                                                <  1:396367/301‑1 (MQ=255)                                                                          ggTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACt                                              <  2:455614/301‑1 (MQ=255)                                                                             tCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAGGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTc                                           <  3:601936/301‑1 (MQ=255)                                                                             cccctacacgacgctcttccgatctaGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTc                                           <  1:640671/276‑1 (MQ=255)                                                                              ccGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTtctagatcggaagag                                          >  4:656767/1‑289 (MQ=255)                                                                                  cGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGACAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTAtt                                      <  3:388545/301‑1 (MQ=255)                                                                                    ttAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGt                                    <  4:59440/301‑1 (MQ=255)                                                                                    cactctttccctacacgacgctcttccgatCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGt                                    <  1:284241/272‑1 (MQ=255)                                                                                             gggAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATG‑‑GCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGTTCCCGctgctg                         >  1:434501/1‑301 (MQ=255)                                                                                                      aGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTcagatcggaagagcacacgtctgaac                  >  3:640684/1‑276 (MQ=255)                                                                                                                      ccacccacCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGTTCCCGCTGCTGGGCCTGGCGTTCAAACCTCTGtt  >  1:233238/1‑301 (MQ=255)                                                                                                                      |                                                                                                                                                                                                                                                                                                             CAAGTGCAGCCAGACGTGGGCGGAGCATGGTGAGTCCTTTTGTGGAGCGTGTCCGTTGAGCGATACCACTCGGGGTTCCGGCGTTAGCGACGGGGAGCCAAAGACCTTATCGTCTGCCCACCCACCATGACAAGATGGATACAGTGATGAAGTATTTGCGCATGTTATTTGACAATTTCACCCTGGCCTTGCTCGGTGTGGTACTCATCGCCACCGTACTGCCTTGCTCGGGCGATGGCGCGGTGTATTTCGGCTGGCTGACCAACCTGGCCATTGGCCTGTTGTTCTTCCTGCATGGCGCCAAACTGTCCCGTGAAGCCATCATTGCCGGTGCCGGGCACTGGCGCCTGCACCTACTGGTGTTCTCCTGTACTTTCGTATTGTTCCCGCTGCTGGGCCTGGCGTTCAAACCTCTGTT  >  AE015451/3278093‑3278510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑