Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AE015451 | 1,124,573 | 0 | G | A | 34.9% | 39.0 / 28.6 | 44 | G190G (GGC→GGT) ‡ | gcvT‑I | aminomethyltransferase |
Reads supporting (aligned to +/- strand): ref base G (12/16); new base A (15/0); total (28/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.51e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ATCGCCTCGGCACCCGGGAAGCCGGCAGCACGTGCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGGTCGTCGAGAATGCCGCCTTGCTCATTGGT > AE015451/1124310‑1124869 | ctcgctcccgaacccgggaacacgcaagcaCGTGCACCTTCGGCACGGCGAACC‑TTGGAAACTTCCCACAGCAGGCCGGCTTCGATCGGCGTAGTCTGGCTTTTCATGTCGTGGCCATCCAGGCACAGGCCCGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGTTCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGtt < 1:496974/275‑1 (MQ=255) tttgcGGCACCAGGGAAGCTGGCAGCACGTGCACGATCGGCACGGCG‑ACCACTGGAAATTGCCTACTGCAGGCTGGTTGGGGTCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTa < 3:615603/297‑1 (MQ=255) tCGGCACCCGGGAAGCCGGCAGCACGTGCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCGGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTCACCGGTACCGCGATCTCGTA‑TCCGTATTCGCC‑GTGTTACCCCGAGCGGCTGACGAAGCCGTCCAAACCCAGGCGTTTTaagt > 1:615591/1‑298 (MQ=255) aCCCGGGAAGCCGGCAGCACGTGCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGttttcgatcggaa > 1:380919/1‑292 (MQ=255) gttcagacgttgtgctcttccgatctgcACC‑TTGGAACTGGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGCACATACAGGCACATGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAg < 4:596006/275‑1 (MQ=255) gTGCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAACAGCTGACGAAGCAGTACAAACCCAGCAGTTTTACCCGGCGAAACTGCATGCAGGTCATGcc > 3:718156/1‑301 (MQ=255) cggcactgccggaccGGCGCACC‑TTGAAAATGGCCCACAGCAGGCTGGTTTCTGGCGGCGGAGTCTCGCGGTCCATGTCGTGGCCCTACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCACGCCGGTCGGCTGTACTTCCGGCTCGGCCATCTGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGcc < 2:568143/287‑1 (MQ=255) gCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATTCGGCCTTC‑CCGGTG‑TAGCCCGAACGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCgg > 3:255857/1‑301 (MQ=255) gCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAGGCTGACGAAGCAGTCCACACCCAGAAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCAGGCCACTTCTg > 4:490208/1‑301 (MQ=255) ccACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GTCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAg < 1:255852/300‑1 (MQ=255) aCC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGTCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAggg > 1:195575/1‑300 (MQ=255) agGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑TAAAAAAAACAGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGCACTGCATGAAGGTCATGCCGGCCCCTTCTGGAGACAGGCGGTCCAGCCCCGTGACTGCAg > 4:323713/1‑301 (MQ=255) gctggctTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATCCCGTCTTC‑CGCTTG‑TAGAACAAAAAGCTGACGAAGCAGACCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGAAGcc > 4:198593/1‑301 (MQ=255) cctggctgccctcggcgtctttgcgcggTTCATGTGGTGTCCATACTGGCACAGTGCAGATTCCAGGCGCAGACAGTCGCGTGCGCCCCAGCCGAGCGGCTGTACTTCCGGCTCCGCCAGCAGGCGGCGGGCCAAGGCGTCGGCGGCGTTGACCGGTACGGAGATCTCGTA‑GCCGTCGTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGcc < 1:718140/274‑1 (MQ=255) ggctTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAACGCTGACGAATAAGTCCACACCCAGCACTTTTACCCCGCTGACCTGCATGAAGGTACTGCCCGCCACTTCTGCAATCTGGAGTTCCCGCACCTCGACTACAGCCggg > 3:727742/1‑301 (MQ=255) tCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGCCTTCTGC‑TTG‑TAAAAAAAAAGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCAGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGCGCCAGGCGTTCCAGCACCTTGACTTCAGCCGGGCCGTGCAg > 4:757896/1‑301 (MQ=255) ctcGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAAGCATAAGAAGCAGTCCACACCCCGCAGTTTTACCCCGCGGAACTGCCAGAATGTCCTGCCGGCAACTTCTGCAGCCCGGCCTTCCAGCACCTTGACTGCAGCCGTGCCTTTCCGGGCGacagat > 4:546813/1‑296 (MQ=255) ctcGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑GTG‑TAAAAAAAAAGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGGTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAgg > 3:329247/1‑301 (MQ=255) tggaggtcagacgtgtgatcgtccgatctgcCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCAc < 4:796536/272‑1 (MQ=255) cTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTTTTC‑CCCTTG‑TAGACCAAAAGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCAc > 4:698242/1‑301 (MQ=255) cGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAgatcggaagagcacacgtctgaact > 3:116497/1‑277 (MQ=255) tGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTCCTGC‑TTG‑AAAACCAAACGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCTAAcc > 4:847314/1‑300 (MQ=255) ggcacaggcCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAGGCTGACGAAACAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCCCTTCTGGAGCCAGGCGTTCCAGAACCTTGAATGCAGCCCGGCCTTGCAGGGCGAGCAGGGCCAGCTCCTCGAACAGCAGGTGCAc > 3:41659/1‑301 (MQ=255) cacaggcCACCTTCCGGGCTCAGCGAGTCGCTTGCGCCCAAGCCGATCGTCTGTACTTCCGGCTCGGTCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCt < 3:195582/301‑1 (MQ=255) caaaggcCAGCTTCCATGCGCAGCGAGTGGCGTGCGCCCGAGCAGATCGGCTTTACTTCCGGCTCGGCCAGCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCAGAGCGGCTGACGAAGCAGTCCACACCCAGCAGGTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCt < 1:329238/298‑1 (MQ=255) tctgtcctaacacgacgatcttccgttctgTGCGTCCAAGACGATCGGCTGTACTTCCGGCGCGGCCATCATGAGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGAACCTCg < 2:702156/272‑1 (MQ=255) gcCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCAcagatcggaagagcgtcgtgtggggaaaga > 2:796266/1‑272 (MQ=255) ccttccaatctcgccgCGAGTCGCGTGCGCCCAAGCCGCTCGGCTGTAATTCCGGCGCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACg < 4:262122/286‑1 (MQ=255) cgcAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCAGCACCTAGCaaacagatcggaagg > 2:262053/1‑288 (MQ=255) gAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑TAACAAAAACAGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGttt > 3:230474/1‑301 (MQ=255) gcgTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCCCGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAgg > 3:39739/1‑301 (MQ=255) gTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑TCCGGCCTCGTCGGTG‑TAGAAAGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCCGGGCACGCTCCTCGAACAGCGGCTGCACCTCgagatcggacgagcacacgtctgaactcca > 4:702398/1‑272 (MQ=255) aaGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTATGCCGTCTTCTGC‑TTG‑AAAAAAAAAAGACTGACGAAGCAGTCCACACCCCGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGAACCACGCAACGACTGCCGATGTGGGTTTACAGGTGAGCCAggg > 3:612006/1‑300 (MQ=255) cGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑TCCCGCTTTCCCCGTG‑TAAACCGAACGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAgatcggaagagcacac > 4:712588/1‑286 (MQ=255) gctgtagggacGGCTCGGACATCAGGCGGCGCGCTAAGGCGGTGACAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCTATCGGCTGAAGAAGCAGTCCACATCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCCGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCATCCGGGCCTTGCAGGGCGGGCAGGGCACGCTCGTCGAACAGCGGCTGCAACTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCtt < 1:39738/291‑1 (MQ=255) gtgtgcgcttccgatttaaGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTgacgac < 3:366292/284‑1 (MQ=255) aaGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTgacgacagatcggaagggcgtcg > 1:366282/1‑284 (MQ=255) aGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑TCCCTTCTCCCCCGTG‑TAACCCAAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTTACGACCAGGAACAGGGTGTCCTc > 4:647293/1‑301 (MQ=255) gCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGTGTGTCCTCGCCCAGGTTgg > 1:408751/1‑301 (MQ=255) cgacgctcttccgatctgTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGgt < 1:617976/284‑1 (MQ=255) cGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGGTCGTCGAGAAt > 1:22529/1‑301 (MQ=255) gTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGgtagatcggaagagcacac > 3:617988/1‑284 (MQ=255) ctttgcgactgtg‑tAGCCCGAGGCGTGGACGAAGCAGTCCACACCCAGCAGGTTTACCACGCGGAACTGCATGAAGTTCATGCCGGCCACTTATGGTGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCGTGCAGGGCGAGCAGGGCACGCTCCTCTAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGGTCGTCGAGAATGCCGCCt < 1:230471/291‑1 (MQ=255) tg‑tAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGGTCGTCGAGAATGCCGCCTTGCTCATTGGt < 3:22530/301‑1 (MQ=255) | ATCGCCTCGGCACCCGGGAAGCCGGCAGCACGTGCACCGTCGGCACGGCGCACC‑TTGGAAATTGCCCACAGCAGGCTGGCTTCGATCGGCGTAGTCTCGCTGTTCATGTCGTGGCCATACAGGCACAGGCCAGCTTCCAGGCGCAGCGAGTCGCGTGCGCCCAAGCCGATCGGCTGTACTTCCGGCTCGGCCATCAGGCGGCGGGCCAAGGCGTCGGCAGCGTTGACCGGTACCGAGATCTCGTA‑GCCGTCTTCGCCGGTG‑TAGCCCGAGCGGCTGACGAAGCAGTCCACACCCAGCAGTTTTACCCGGCGGAACTGCATGAAGGTCATGCCGGCCACTTCTGGAGCCAGGCGTTCCAGCACCTTGACTGCAGCCGGGCCTTGCAGGGCGAGCAGGGCACGCTCCTCGAACAGCGGCTGCACCTCGCAACGGCTGCCGATGTGGGTTTGCAGGTGAGCCAGGTCCTGCTCCTTGCAGGCGGCGTTGACGACCAGGAACAGGGTGTCCTCGCCCAGGTTGGCAACCATCAGGTCGTCGAGAATGCCGCCTTGCTCATTGGT > AE015451/1124310‑1124869 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |