New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5201567	33 (0.380)	10 (0.120)	9/546	9.3	25.4%	intergenic (‑53/‑127)	PP_4582/PP_4583	conserved membrane protein of unknown function/putative Peptidase
	?	AE015451	5201666 =	26 (0.300)					intergenic (‑152/‑28)	PP_4582/PP_4583	conserved membrane protein of unknown function/putative Peptidase
Rejected: Coverage evenness skew score above cutoff.

GTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTACCACCGCCGGCGACGA  >  AE015451/5201516‑5201956                                                                                                                                                       |                                                                                                                                                                                                                                                                                                   gtgtTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCTGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAAcc                                                                                                                                                                                                                                                     >  2:74922/1‑198 (MQ=255)                                       acacTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCACCg                                                                                                                                                                                                                                                 >  1:875431/1‑164 (MQ=255)                                         acTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCCGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGcc                                                                                                      >  1:498241/1‑301 (MQ=255)                                                    cgcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACCCGCTTACCTGCAAGCTGAAACCGCCTCCCAGGAAGCCTGCCTGGCCGACCCGGCCACGTTGCGTTAACGCCTGTTCgaaga                                                                                            >  2:290356/1‑300 (MQ=255)                                                                                               cGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGgcg                                                 >  2:178423/1‑300 (MQ=255)                                                                                                  cccTACCCCGGGGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCt                                             <  2:266927/300‑1 (MQ=255)                                                                                                   ccTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGc                                                                                  >  1:266933/1‑263 (MQ=255)                                                                                                   ccTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCAT‑CTGGAAACCGACCTGTc                                                           >  1:336531/1‑285 (MQ=255)                                                                                                                   cccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCAT‑CTGGAGACCGACCTGTCAtt                                                        <  2:336520/272‑1 (MQ=255)                                                                                                                     cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATc                                                                                        >  2:491927/1‑239 (MQ=255)                                                                                                                     cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATc                                                                                        <  1:491948/239‑1 (MQ=255)                                                                                                                         tGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTaca                        <  1:178427/299‑1 (MQ=255)                                                                                                                                ggTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCAACGTTGCGTGAGCGCCTGTTCGAAGAAATCAAAGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCCTacc                >  2:844549/1‑300 (MQ=255)                                                                                                                                   ttACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCAt                                                         >  2:159711/1‑256 (MQ=255)                                                                                                                                   ttACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCAt                                                         <  1:159715/256‑1 (MQ=255)                                                                                                                                    tACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGtact                           <  1:554049/285‑1 (MQ=255)                                                                                                                                    tACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCCGGGGCCCCTACCTGtact                           >  2:554028/1‑285 (MQ=255)                                                                                                                                      cccGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGt                   >  1:119679/1‑291 (MQ=255)                                                                                                                                      cccGCGAAGAGGCCGGAACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGt                   <  2:119677/291‑1 (MQ=255)                                                                                                                                       ccGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTACCAccg            >  1:132092/1‑297 (MQ=255)                                                                                                                                          cgAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTaccacc             <  1:10886/293‑1 (MQ=255)                                                                                                                                          cgAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTaccacc             >  2:10884/1‑293 (MQ=255)                                                                                                                                           gAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCGCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAGGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCgc                                                                                               >  2:209353/1‑209 (MQ=255)                                                                                                                                           gAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTTGGGCCCCTACCTGTACTACACCCGTACCACCTCCGGcg      >  2:592931/1‑299 (MQ=255)                                                                                                                                            aaGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGTGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTACCACCCCCGGcgac    >  2:755129/1‑300 (MQ=255)                                                                                                                                               agGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTACCACCGCCGGcgacga  >  2:517320/1‑299 (MQ=255)                                                                                                                                                       |                                                                                                                                                                                                                                                                                                   GTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAGAAATCAAGGGCCGCATCCTGGAGACCGACCTGTCATTGCCGGCGCCCTGGGGCCCCTACCTGTACTACACCCGTACCACCGCCGGCGACGA  >  AE015451/5201516‑5201956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.