| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 71309 = | 95 (1.390) | 3 (0.040) | 3/592 | 6.8 | 4.0% | coding (596/2055 nt) | glyS | glycine‑tRNA ligase beta subunit |
| ? | AE015451 | = 2773920 | 50 (0.740) | coding (924/1053 nt) | calA | coniferyl alcohol dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGGTGTGGAACTGGCCGAGATCGACCAGAGCGGCCCCAAGCTGCGCTTCTCCCAGCACATCCCGGGCAAGGCTACCGTTGGGCTGCTGCCGACCATCGTCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/71612‑71309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGCAGAAGTCCAGCACTTCCTGAGTCTCGGCAATCCCCCCGATCAACGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTCGAGCAGGAAATCGAAACGACCGGCAGCGGCGCGCATCTGCTCGGCATCGGTGGAGACGATCACATGGTCGGCCCCCTGGCGGCGAGCTTCCTC < AE015451/2773920‑2773633 GCGGTGTGGAACTGGCCGAGATCGGCCAGAGCGGCCCCAAGCTGCGCTTCTCCCAGCACATCCCGGGCAAGGCTACCGTTGGGCTGCTGACGACCATCGTCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCC < 1:368402/301‑1GCGGTGTAGAACTGGCCGAGAGCGACCAGAGCGGCCCCAAGCGGCGCTTCTCCCATCACATGCAGGGCAAGGCTACCGTTGGGCTGCTACCGACCATCGTCTAAGCTTCGCTGAGCGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCGGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCC < 2:632194/301‑1 gGGTGTGGAACTGGCCGAGATCGACCAGAGTGGCCGCAAGATGCGATTCGCCCAGAACATCCCGGGGAAGGCTACCGTTGGGCGGCTGCCGAGCATCGGCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCG < 2:125105/300‑1 gGGTGGGGAACTGGCCGAGATCGACCAGAGCGGCCCCAAGCTGCGCTTCTCCCAGCACATCCCGGGCAAGGCTACCGTTGGGCTGCTGCCGACCATCGTCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCG < 2:567942/300‑1 GGTGTGGAACTGGCCGAGATCGACCAGAGCGGCCCCAAGCTGCGCTTCTCCCAGCACATCCCGGGCAAGGCTACCGTTGGGCTGCTGCCGACCATCGTCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCGG < 1:3505/301‑1 GCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCGGCGCAGAAGTCCAGCACTTCCTGAGTCTCGGCAATCCCCCCGATCAACGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACT > 1:180617/1‑301 GGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCGGCGCAGAAGTCCAGCACTTCCTGAGTCTCGGCAATCCCCCCGATCAACGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTCGAGCAGGAAATCGAAACGACCGGCAGCGGCGCGCATCTGC < 2:180551/301‑1 tgtcacgCCCGACGCAGAAGTCCACCACTTCCGGGTTCTCGGCAATCCCCCCGATCAACGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGATTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACATCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTCGAGCAGGAAAGCGAAACGACCGGCAGCGGCGCGCATCTGCTCGGCATCGGTGGAGACGATCACATGGTCGGCCCCCTGGCGGCGAGCTTCCTC < 1:91145/294‑1 GCGGTGTGGAACTGGCCGAGATCGACCAGAGCGGCCCCAAGCTGCGCTTCTCCCAGCACATCCCGGGCAAGGCTACCGTTGGGCTGCTGCCGACCATCGTCGAAGATTCGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCGGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAATGGCTGGTGATGCTGCTGGGCGATCAGGTGGTCGATTGCACCATCCTGTCGCAGAAGGCCGGGCGTGAATCCCGTGGCCACCGCTTCCACCATCCGGAAAACGTGCTCATCACCACCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/71612‑71309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGCAGAAGTCCAGCACTTCCTGAGTCTCGGCAATCCCCCCGATCAACGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTCGAGCAGGAAATCGAAACGACCGGCAGCGGCGCGCATCTGCTCGGCATCGGTGGAGACGATCACATGGTCGGCCCCCTGGCGGCGAGCTTCCTC < AE015451/2773920‑2773633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |