New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	973724 =	81 (1.190)	4 (0.060)	4/598	6.3	5.2%	coding (143/909 nt)	secF	Sec translocation complex subunit SecF
	?	AE015451	3952435 =	64 (0.940)					coding (115/657 nt)	PP_3488	Sco1/SenC family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGGATCGTCGCCAGGCATGCGCACAAGCAGGTCAGTGGTAGCACCGAAGCTCTGCACCACGGCCTCGTTGAAGCCGGATTCGACCAACTCGGCACGCACAGCCTTGACGTCGGCCGGGCGCTCGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/973852‑973724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGACTGCACATGCAGGTACCAGGCGCCGGCCTCAGGCAAGTTCAGCGCCGCCTGGTAGACCCCCTCGCCCACCTCTTGCAACCG  >  AE015451/3952435‑3952734                                                                                                                                                                                                                                                                                                                                                                                                                                               TGGGATCGTCGCCAGGCATGCGCACAAGCAGGTCAGTGGTAGCACCGAAGCTCTGCACCACGGCCTCGTTGAAGCCGGATTCGACCAACTCGGCACGCACAGCCTTGACGTCGGCCGGGCGCTCGTAGGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACCTTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGg                                                                                                                                  >  2:282014/1‑300                                                AAGCTCTGCACCACGGCCTCGTTGAAGCCGGATTCGACCAACTCGGCACGCACAGCCTTGACGTCGGCCGGGCGCTCGTAGGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGA                                                                                   <  1:282113/301‑1                                                                                                                 ggtatttgccgtggAGGCGGCCGGGGGCTGACCGGCATGCCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGACTGCACATGCAGGTACCAGGCGCCGGCCTCAGGCAAGTTCAGCGCCGCCTGGTAGACCCCCTCGC                  <  2:307636/287‑1                                                                                                                             gggGGCCGCCGGGGGGTGCCCGGCATGGCGGTCATGCGCGTGCCCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGACTGCACATGCAGGTACCAGGCGCCGGCCTCAGGCAAGTTCAGCGCCGCCTGGTAGACCCCCTCGCCCACCTCTTGCA      <  2:439908/298‑1                                                                                                                                 GCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGACTGCACATGCAGGTACCAGGCGCCGGCCTCAGGCAAGTTCAGCGCCGCCTGGTAGACCCCCTCGCCCACCTCTTGCAACCc  >  1:178207/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                               TGGGATCGTCGCCAGGCATGCGCACAAGCAGGTCAGTGGTAGCACCGAAGCTCTGCACCACGGCCTCGTTGAAGCCGGATTCGACCAACTCGGCACGCACAGCCTTGACGTCGGCCGGGCGCTCGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/973852‑973724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGCGCAGGCTGGTGTAGTTTTCTTCGGCAAACTTGCGCCCCAACGAGGGCGACTGCACATGCAGGTACCAGGCGCCGGCCTCAGGCAAGTTCAGCGCCGCCTGGTAGACCCCCTCGCCCACCTCTTGCAACCG  >  AE015451/3952435‑3952734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.