New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4969528 =	81 (1.280)	3 (0.050)	3/574	6.1	3.7%	coding (715/2064 nt)	fliC	flagellin, filament structural protein
	?	AE015451	= 4969524	77 (1.280)					coding (719/2064 nt)	fliC	flagellin, filament structural protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATCTGCTCGATGGCACCTTCTCCGGCAGCAGCTTCCAGGTTGGCGCGAACTCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGAAGGGCAACTACAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4969838‑4969528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCATTGGTTGCG  <  AE015451/4969524‑4969226                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAATCTGCTCGATGGCACCTTCTTCGGCAGCAGCTTCCAAGTTGGCGCGAACTCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGGAGGGCAACTACAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACC                                                                                                                                                                                                                                                                                                                       <  1:609408/301‑1      gGCTCGATGGGACCTGATCCGGCAGCAGCTGCCAGGTTGGCGCGAAATCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGAAGGGCAACTAAAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCAC                                                                                                                                                                                                                                                                                                                  <  2:716131/300‑1           GATGGAACCTTCTCCGGCAGCAGCTTCCAGGTTGGCGCGAACTCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGAAGGGCAACTACAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCA                                                                                                                                                                                                                                                                                                             <  1:329186/301‑1                  CCTTCTCCGGCAGCAGCTTCCAGGTTGGCGCGAACTCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGAAGGGCAACTACAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGATGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCATCGCTGC                                                                                                                                                                                                                                                                                                      >  2:507730/1‑301                                                                                                                                                                                                                                              GGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGTCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTG                                                                          >  1:622151/1‑301                                                                                                                                                                                                                                                      TTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTTAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGG                                                                  <  1:507938/301‑1                                                                                                                                                                                                                                                                                                              ACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCAT          >  1:32992/1‑301                                                                                                                                                                                                                                                                                                                  CCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCATTGGT      <  1:404093/301‑1                                                                                                                                                                                                                                                                                                                    ACCAACGCTGGTGCGGCAGGCGACACCCTGCAGGATGTGGTTGAAAATAGCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCTACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCATTGGTTG    <  2:48026/301‑1                                                                                                                                                                                                                                                                                                                      CATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCATTGGTTGCG  >  2:490278/1‑301                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAATCTGCTCGATGGCACCTTCTCCGGCAGCAGCTTCCAGGTTGGCGCGAACTCCAACGAAAGCATTTCGTTTGGCATGAAAGATGTCAGCGCTACCTCGATGAAGGGCAACTACAACGAAGCCAGCGTTGCCGGCGGTGTTGCTACCCTGCAAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCTGAACGTTGGTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4969838‑4969528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCGATGCCAGCACTGATGACGTCTTGAGCACTGCCTTGGGTCTGGCCGAGGCCGGTGGTGCCCAGCTGTCGAAAACCGGTACTGCCAACCTGCGTGATGGTGTATTGGGGGCCGGTGGTGCCGGTAACCTGACGCTCGGCTCTACCAACATTGCATTGGTTGCG  <  AE015451/4969524‑4969226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.