Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AE015451 | 4,169,472 | 0 | T | C | 30.8% | 45.3 / 20.2 | 40 | K141E (AAG→GAG) | katG | Catalase‑peroxidase |
Reads supporting (aligned to +/- strand): ref base T (14/13); new base C (12/0); total (26/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.97e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGCACGGCGGCCAGCGGGTTTTCCAGGTTACGCTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAGGGCCTGAAAGTCGAGGCTCTTGAACGCCTTGGCATAGTCGAAGTCCGG > AE015451/4169177‑4169766 | tGCACGGCGGCCAGCGGGTTTTCCAGGTTACGCTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCttg‑t‑tcc > 1:566694/1‑299 (MQ=255) cggcggCCACCGGGTTTTCCAGGTTACGCTCGTCCGACAGGTCTCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTa < 2:459124/301‑1 (MQ=255) ggcCAGCGGGTTTTCCAGGTTACGCTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑T‑TGGCCTACttt > 1:445897/1‑300 (MQ=255) ccatctggTTTTCCAGGTTACGCTCGGCCGACAGGTCGCGATTCTGCGCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTg < 1:158676/295‑1 (MQ=255) ttACGCTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TTGCGTACTTCTGCTTGATCGGCCAcagca > 1:91211/1‑301 (MQ=255) cTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGCCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATAGGCCACAGCCGgcgc > 1:296144/1‑301 (MQ=255) cGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATGCCGT‑CTTCTGCTTGaaaaaaaacagaaggcgcaa > 1:350041/1‑282 (MQ=255) cGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCAATGGATTCGAGGGCAACATTACCCGTGAGTACCACCAGGTCGGCACAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGACCGGCCACAGAAGGCGCCg > 2:180593/1‑301 (MQ=255) gCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCggg > 1:274629/1‑301 (MQ=255) aCAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCtt < 1:522412/301‑1 (MQ=255) gATTCTGCTCTTCACCATGCTTGGCAGTCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGACTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGACGGCAACATTACCCGTGAGTACGATCAGGTAGGCCCAGGAAACATTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAAGCGCCGGCCCTTGTACAGGCt > 2:24078/1‑301 (MQ=255) ttCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑T‑TGGCGTACTTCTGCTTGATAGGCCACAGCAGGCCACGGGCCTTGTCCAgcctct > 1:446933/1‑296 (MQ=255) aCCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCTTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGAAGTTGTCCGGc > 2:235069/1‑301 (MQ=255) gttGGCAGGCTCGGCCACCCGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGAACTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTg < 2:699012/300‑1 (MQ=255) cggtgCAGGCTCGGCCACCAGGTGACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCCTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGAAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTg < 2:189026/297‑1 (MQ=255) ggCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TTCCGTACTTCTGCTTGAACGACAAAAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCgggtcg > 1:153350/1‑298 (MQ=255) ccaGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TTCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCg > 1:267800/1‑301 (MQ=255) ccACCATGCCTCGGCGGCTGCGCCTTGACCTGATCCTTGCCTTAACGGGTATCACCCCCTAGCCAGCCCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCt < 1:398573/300‑1 (MQ=255) cTGCCCAGGCGGCGGCGCCTTGACCTGATCCTTGACGTAACGGGGTTCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGACCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCa < 2:91173/301‑1 (MQ=255) ggcggcTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑AGCCGTACTTCTGCTTGATCAACCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGACCGGGGCGAAGCGTTGCTGGCCAGCGcccc > 1:191669/1‑300 (MQ=255) aCCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGTGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGCCGAAGCGTCGCTGGCCACAGCCCGCACCACCGCGGCCac > 2:450055/1‑300 (MQ=255) cTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATCCCG‑ACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTCTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCCGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATcc > 1:91095/1‑300 (MQ=255) aGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATGCCGT‑CTTCTGCTTGAAAAAAAACAGCAGGCGCCATGCCTTGTACAGGCTGACGTTGTCCGGCCAGCTGTTGAGCTGGGCGAAGCTTTGCTTGCCATAGCCCGCACCACTGCGGCCATCACCAATACGGTAGGATCCGgcgccatccccgg > 1:439086/1‑292 (MQ=255) caagacccacagtcaccGTCTTCGGCCGGCTCCCACACATCGGCCAC‑CCCGCCTGACAAGCCGAAGGTCTTGAATCCCATGGCTTGGAGGGCAACATTACCCGTGGGTGCGATCAGGTCGGCCCAGGAGATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGa < 2:566449/285‑1 (MQ=255) gACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCGTT‑TGCCG‑ACTTCTGCTTGATAAGCCAAAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGAGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTATGTTCCGGCTCTATGCCAGGCCATGCGGATGcaca > 1:61657/1‑301 (MQ=255) ggTACAGGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGcc < 1:450245/300‑1 (MQ=255) acatgtgttCGTCCGGATCACACACATCGT‑GACGCCCGCCGGAGAAGCCGAAGTTCTTGAAGCCCATGGAGTCGAGGGCAACATTACCCGTGAGTACGAGCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGAGCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTa < 1:235159/294‑1 (MQ=255) gCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑T‑TTCCGGTCTTCTGCTTGATTGAACACAGCAGGCGCCGGGCCTCGTCCAGGCTGACGTTGCCCGGCCAGCTGTCGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCAGCACCGCGGCAATCCCCAATGCGGTAAGTGCCGGCGCTATTCCAGGCCATGTGGCTGAACAGCCGTCCGTAGGGGCCGAAGTctgg > 1:536611/1‑298 (MQ=255) aaGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTGGGtccgca > 2:498200/1‑297 (MQ=255) ccGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATG‑CGTACTTCTGCTTGAAAGACAAAAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGTTAGGTGCCGGCGCTATCCCAGGCCATGCGGATGCACAGCGGGCCGTAGTGGTCGCATTCGTCCTGCCCCCCATCCTGCGAGCCGGtcatcatgc > 1:61880/1‑298 (MQ=255) aGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCAGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCggg > 1:306502/1‑300 (MQ=255) tCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTGG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCAGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAg < 2:306383/301‑1 (MQ=255) cTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATG‑CGTACTTCTGCTTGAACGGACAAAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGCCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGCAGTGGCCGCAGTCGGCCGGCTACCAATCCTGCGAGTCGGCCATCAGGCCGGTCAgg > 1:249278/1‑301 (MQ=255) aGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCG‑TATGCCGT‑CTTCTGCTTGAAAAAAAAAAGCAGGCGCCGGGCCTTGTCCAGTCTGACGTTGTCCGGCAAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTTGACGAAGTCGGCCGGCCAACAATACTGCGAGTCGGTCATTCGGGCGGTCAGGtcttt > 1:352658/1‑301 (MQ=255) ggagtCGAGGGAAACATTACCCAGAATTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTCCTGCTGGATCGGCCACGGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTAGGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAgg < 2:267695/297‑1 (MQ=255) gaaTTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAgg < 1:498405/299‑1 (MQ=255) gATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATAGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCTATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGTCCGAAGTCGGCCGGCAACCAATCCTGCGAGGCGGTCATCAGGGCGGACAGGTCTTTCTTCAggg > 1:389802/1‑301 (MQ=255) aTTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTCGTT‑TGCCGT‑CTTCTGCTTGATCGACCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGTCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCGGGCCACCAATCCTGCGAGTCCACCATCACGGCGGTCGGTTCTTTTTTCCGGGc > 1:264625/1‑301 (MQ=255) aGTACGATCAGGTCGGCCCAGGAAATCTCG‑T‑TTGCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAGGGCCTGAAAGTCGAGGATCTTGAACg > 1:564326/1‑301 (MQ=255) gTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGTCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAGGGCCTGAAAGTCGAGGCTCTTGAACGc < 1:522953/301‑1 (MQ=255) aaaTCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAGGGCCTGAAAGTCGAGGCTCTTGAACGCCTTGTCTTAGTCGACGTCCgg > 1:9338/1‑301 (MQ=255) | TGCACGGCGGCCAGCGGGTTTTCCAGGTTACGCTCGGCCGACAGGTCGCGATTCTGCTCTTCACCATGCTTGGCAGGCTCGGCCACCAGGTCACCCTGCCCCGGCGGCTGCGCCTTGACCTGATCCTTGCCGTAACGGGTATCACCCCCTAGCCAGACCTTTTCCGACCCCCAGTACACGTCTTCGTCCGGCTCCCACACATCGG‑CACGCCCGCCGGAGAAGCCGAAGGTCTTGAAGCCCATGGATTCGAGGGCAACATTACCCGTGAGTACGATCAGGTCGGCCCAGGAAATCTTG‑T‑TGCCGTACTTCTGCTTGATCGGCCACAGCAGGCGCCGGGCCTTGTCCAGGCTGACGTTGTCCGGCCAGCTGTTGAGCGGGGCGAAGCGTTGCTGGCCAGAGCCCGCACCACCGCGGCCATCACCAATGCGGTAGGTGCCGGCGCTATGCCAGGCCATGCGGATGAACAGCGGGCCGTAGTGGCCGAAGTCGGCCGGCCACCAATCCTGCGAGTCGGTCATCAGGGCGGTCAGGTCTTTCTTCAGGGCCTGAAAGTCGAGGCTCTTGAACGCCTTGGCATAGTCGAAGTCCGG > AE015451/4169177‑4169766 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |