Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AE015451 | 196,438 | 0 | T | C | 53.4% | 3.5 / 70.1 | 59 | S648S (AGT→AGC) | PP_0168 | putative surface adhesion protein |
Reads supporting (aligned to +/- strand): ref base T (11/16); new base C (18/13); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CGTCACCATCGAGAACGCCACGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGC > AE015451/196138‑196738 | ggttaccctggggaACGCCACGGGCGGGAAAGTAGAGCAAATGACCCCGATCCCGTCGCCGGGTCAGAGACCGAACAACGGCTCGGGCGCCACCACTGGCGTTAACCCGACGGCTATCCCGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAgt < 1:493892/289‑1 (MQ=14) ggcagTAAGTTCGTGCAACTGACCCAGAACCCGACGGCGGCTGAGAACAAGATCAACGACTCGGTCGACACCACTGCCGCGACCCGGACGGCGAGCCCGTCGGTCACGGAAGGCGACGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAACCTGTCCAGCGGCCAAACCATTACCGTTGAAGCGGGCAAAAGCAATGACAGCGTCGATTTC‑CCGACCCCGGCCAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACcg < 1:104150/297‑1 (MQ=14) ggCGGTAATTTCGAGCAACTGACCCCGAACCCGCCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCAcag < 2:352975/301‑3 (MQ=12) cTGACCCCGAACCCGACGGCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCCGTGCCCTAGAAGCCGGCACAACCCAGCGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 2:450134/301‑1 (MQ=14) cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCCAACCATTACCGTTTAAGACGTCAAAACCCCGGGCATAGTCGATTAC‑GCGACCCCGTCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTATCACCATCGAGAACGCCACCGGCGTTAATTTCGAGCAAc > 1:568276/1‑301 (MQ=14) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTACAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACCGGCGGCAACTTCGATCATCTGAc‑c > 1:50662/1‑301 (MQ=255) cccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACTGCGAGGCCGTCGGTCACCGACGGCGTCGAGATCACTTACACCGTGACCCTCAGCAACCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAAt < 1:632180/301‑1 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGcccc > 1:331123/1‑298 (MQ=255) aacggtgcgggcGACACCACTACCGCGGCCCGGACGGCGAGCCCGTCGGTGACCGAAGGCGGCGGGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCTGGCTAATCACACGGCAGCCACCGTGAC‑CAAACCCCTGCCCATAACGGCCAC‑TCTACCGATCTGACGGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCa < 2:667530/290‑1 (MQ=2) cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCACGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGACTCCGACGCCGGCTCAGACAACGATCAACGACTCgttc > 1:455417/1‑298 (MQ=255) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc < 1:681047/301‑1 (MQ=40) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACAGCCCGACAATTCGCCTTGTAGCGGGC‑AAGTCTAGGTCCCGGTGGGCTTCGCAGACTCCGACGAATGACGACTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAACTTCAAGCAACTGAC‑CCCGAATCCGACCACGGCTCCAACCACGATCAACGACTCGGTCGATGccc > 2:725523/1‑300 (MQ=2) aCCGAAGGCGTCGTGATCAATTACACCGTGACCCTAAGCAATCCTGCCCAGACGCCGGTGACAGTTACACTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTTAGTGTCACCATCGAGACCGCCACCGCCGATAACTACAATCTACCGACACCCG‑ACCCGCTGCCGATCCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 2:330996/301‑1 (MQ=11) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTTCAGCGGCCAAACCATGTCCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCCAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 1:156692/301‑1 (MQ=255) cctaagcaagcccttccgatcGCCGGTAACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGAcc < 1:58732/281‑1 (MQ=255) cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAGCTGAC‑CCCGGATCCGACGCCCGCACATACGACGATCAACGACTCGGCCTATGCTACCATCCCGACCCTGACGGCGAACACGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTCACCCTgcgc > 1:405609/1‑298 (MQ=14) gccTGCCCCGACGCCGGAGTCAAGGACCCTGACCAAAGGTCAAACCAGTACCGTTGAAGACGGCAAAACCCAGGCCAGCTTCGATGGC‑CAGAGCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAACACGCCACCGGTTTTAAATGCGACGAACTCAC‑CCCAGATCCGCAGCCGGCTCCGACCCGGATCTCCTCCGCGCTCGATGCCACAACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAAt < 2:455227/300‑1 (MQ=9) ccggacgcacggaacaatgccccTGTCAAAAGGCCAAACCATTAGCGTTCAGACCGGCAAAACCCCGGGCTGCGTCGATTTC‑CAGACCCCGGCAAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGcc < 1:426967/281‑1 (MQ=14) gacgtgtgctcttccgatcttGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAg < 1:338955/281‑1 (MQ=255) cccgacgcgtttccgtgctcAACGGCCAAACGATTACCGTTGAAGCCGGTAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCCAATGACGTCTACAACAACGGTTC‑GACGGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc < 2:299174/282‑1 (MQ=11) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCGGCCCAGagatcggaagagcgtcgtgt > 2:338828/1‑282 (MQ=255) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAAc < 1:725832/301‑1 (MQ=255) cAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACCGGCGGCAATTTCGAGCAACTGAC‑CCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGCCGAGCCCGTCGGTCACCGAAGGAGGCGGGAACACCTACACCGTGACCCTAGGCAATCCTGCCCCGAcacccgtagacacggccgggtctgacgtag > 2:498626/1‑272 (MQ=11) gaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGCACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTCCACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GCGACCCTGTCCACCGGCCAAAcc > 1:328883/2‑301 (MQ=11) ccatACCGTTGAAGCCTGCAATACCCAGGTCACCGTCGATTTC‑CACACCCCGGCAAATGACGTCGACATCCTCGGTTC‑AACCGTCAGCGTCACCCTCCAGAACGCCACAGGCGGTAATTTCGAGCGACTGAC‑CCCGTATCCGACTCCTGCTCAGACCACGATCCACGACTCGGTCCATGCTACCGCCGCTACCCTTCCGGCGAGCCCGTCTGTCACCGAATGCGGCGTAATCACCTACACCTTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAAcc < 1:80403/298‑1 (MQ=2) cgctcttcggatctgCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCAtt < 2:528221/287‑1 (MQ=255) ccgttaaaggaggCAAAACCCAGGGCAGACTCGATTTC‑CAGGCCCGTGGGAATGACCTCTACCACAACGGTTC‑GACTGTCAGAGTCAACATCGAGAACGCCACAGGCGGTAATTTCGAACAACTGTC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCGCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTAAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTAc < 2:360696/290‑1 (MQ=11) aaGCCGGCAAAACCCAGGGCAGCGTCGACTTC‑CAGACCCCGGCGTATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGa > 1:363022/1‑301 (MQ=11) gCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTagatcggaagagcc > 1:528442/1‑288 (MQ=255) aaaaCCCAGGGCAGCGTCGACTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCCACACCGTCACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCCTTGAAGCCGGCa > 1:722378/1‑301 (MQ=11) gggCAGCGTCGAGTTC‑CATACCCCGGCGAACGACGTCTACAACAACGGTTC‑GACCGGCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAACAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACGCGGTCGATGCCACCACCGCGACCCGGACGGCGAGCACGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAg < 1:382712/301‑1 (MQ=11) gCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAggg < 1:636277/301‑1 (MQ=255) aGCGTCGACTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCAACCCTGACCTCGAGCCCGTCGGCCACCGATGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTCACA‑GTGACCCTGTCCAACGGCCAAACCCTTACCGTTGAAGCCGGCAAGAC‑CCAgtgcc > 1:28997/1‑297 (MQ=11) gCGTCGACTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGATGACA‑GTGACCCGGTCCAACGGCCAAACCATTACCGTTGAAGCCGTCAAGAC‑CCAGGGCac > 1:101211/1‑300 (MQ=11) cttC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGAt < 1:57745/300‑1 (MQ=255) ttC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGACACCACCGCGACCCTGACAGCGAACCTGTCCGTGACCGACGGCGGCGTAATCACCTACACAGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGaat > 1:89898/1‑299 (MQ=11) tC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACC‑GTGACCCTGTCCAACGGCCAAACCATTAACGTTGAAGCCGGCAAGAC‑CCAGGGCAGCCTCGaata > 2:57721/1‑298 (MQ=11) gtctgACCCCGGCGAAGGACGTCTACAACAACGGTTC‑GACCGTCCGCGGCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGAttt < 2:702519/297‑1 (MQ=11) c‑cAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAA‑CCAGGGCAGCGTCGATTTc > 1:493289/1‑301 (MQ=255) gACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGAtttagat > 1:702819/1‑297 (MQ=255) aCCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGa > 1:225578/1‑301 (MQ=255) gggtgaatgacagccacatcctcgtccgaaCTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGAcccc < 1:506346/272‑1 (MQ=11) cGAATGACGTCTACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCCACCCTGACGGCGAGCCCGCCGGTCACAGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCggg > 1:42947/1‑300 (MQ=11) aTGACGTCTACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACGCGGCCAGAC‑CCAGGGCAGCgctcattgccaacccccggcgaa > 2:444540/1‑279 (MQ=11) cgtatACAACAACGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCCAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGGGCAATCCTACCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 1:689009/297‑1 (MQ=11) cTACAACAACGGTTC‑GACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACTCTGCCCAACGGCCAAACGATTACAGTTGAAGAGGGCAA‑ACACCAGGCCAGCGTCGacgtaaataacccggcaaaggacgtc > 1:219116/1‑276 (MQ=11) caacaaCGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCGGACGCACGCCACGATCGACGACAGGGTCGATCCCACCACCCCGCGCCTCACGGCGAGCACGTCGGTCACCGAAGGCGGCGTGATCACCTACACCATGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATGACCGTTGAAACCGGCAAGAC‑CCAGGGCAGCGTCCATTTCCAGACCCCAGCGCATGaacttcac > 2:379740/1‑294 (MQ=14) aacaacGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCCTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTCCCGTTGAAGCCGGCAAGAC‑CCAGGGCACCGTCGATCTCCAgtccgcacaccatgacgcttacc > 1:34123/1‑279 (MQ=14) agacgtgtgctcttccgatctgtCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACC‑GTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAC‑CCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTaca < 1:137815/281‑1 (MQ=11) acaacGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa > 1:172200/1‑301 (MQ=255) acaacGGTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGCTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAACCCTGCCCAGACGCCGGTGACC‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAC‑CCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACCTCTacaa > 1:351962/1‑301 (MQ=11) caacGGTTC‑GACGGGCAGCGTCACCATCGACAACGCCACAGGAGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTAGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGGGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaac < 1:104760/301‑1 (MQ=11) acGGTTC‑GACCGTCAGCCTCACAAGCGAGAACGCGACAGGCTGTAATTTCGGGCAACTGAC‑CCCGAAACCTACCCCGGCTCAGACCATGATCAACGGCTCGCTTGATGCCACCACCGCGACCCTGACCGCGAGCCCGTCGGTAACCGAAGGCGGTCTAATCACCTACACCGTGACCCGGAGCAATCCTGGCCATACGCCGGTGACA‑GTGACCCTGTCAAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGAAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 1:654909/301‑1 (MQ=11) cGGTTC‑GACTGTACGTGTCACCATCGAGAACGCCACCGGCGGTAACTTCGAACAACTGAC‑CCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac < 2:172126/301‑1 (MQ=12) ggTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 1:444730/301‑1 (MQ=255) ggTTC‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTCACTCTGAACAATCCTCCCCAGACCCCGGT‑TCACGTAACCCTGTCCAACGGCCAAACCATTACCGTTGAAGACGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGAGAATGACGTCTCCAACAACg > 1:4968/1‑301 (MQ=11) cgtcttccgatgttgtCACCATCGGGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGGCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg < 2:158720/288‑1 (MQ=255) c‑GACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAGTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:708727/301‑1 (MQ=255) ggACTGTCAGTGTAAACATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCGCAGACCACGATCAACGACTCGGTAGATGCCACCACCGCGAACCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGTAATCCTGCCCAGACGCCGTTGACA‑GTGGTGCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:50884/300‑1 (MQ=14) gaccgTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAGCCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGCCGATTACCAGACCCCTGCAAATGACgcacccaactaaagttcg > 1:171028/5‑284 (MQ=11) gACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACCCGGCAAGAC‑TCACGGCACCGTCGATCTCCAGCCCCCGGCGACTGACTCCTACAACAACAGTTca > 1:181743/1‑300 (MQ=14) gACTGTCAGTGTCACCAGCGAGAACGCCACCGGCAGGAATGCCGAGCAACTGTC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 1:740590/301‑1 (MQ=255) tgtCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTTAAGCCGGCCAGAC‑TCAGGGCAGCGTCCATTTCCAGACCCCGGCGACTGAcctccaaaaaaccagcccaacagtcatc > 2:461454/1‑274 (MQ=14) tgtCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACggagatcggaagagc > 1:158790/1‑288 (MQ=255) | CGTCACCATCGAGAACGCCACGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTC‑CAGACCCCGGCGAATGACGTCTACAACAACGGTTC‑GACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAC‑CCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACA‑GTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAC‑CCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGC > AE015451/196138‑196738 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |