Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	4236704	4239386	2683	17 [16]	[16] 17	[catA‑I]–catR	[catA‑I],catC,catB,catR

CATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTTACCTCGTATTGTTCTTGTCAGGCATACAGGTGCGAATCAGC  >  AE015451/4236404‑4236820                                                                                                                                                                                                                                                                                                            |                                                                                                                      cATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGcc                                                                                                                      >  2:108056/1‑300 (MQ=255)         cTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAg                                                                                                              <  3:323842/301‑1 (MQ=255)                                                ggCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAgt                                                                       <  4:432893/301‑1 (MQ=255)                                                ggCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAgg                                                                       >  4:145986/1‑300 (MQ=255)                                                 cccTTCGGTGTTGCGCTGGGTGCCCCCGCCAAGGCCGGCTTCGGCAGCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAgtg                                                                      <  2:145948/300‑1 (MQ=255)                                                          ggTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAAtt                                                             <  4:378438/301‑1 (MQ=255)                                                                  gggTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGt                                                     >  4:106189/1‑301 (MQ=255)                                                                     ttccgatctcAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCAt                                                  <  1:257802/292‑1 (MQ=255)                                                                     tGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTTTGGGAAATTTTCACGGTCAt                                                  >  1:72606/1‑301 (MQ=255)                                                                              cAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCAtagatcggaa                                         >  3:257801/1‑292 (MQ=255)                                                                              cAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGttctgac                                         >  1:365586/1‑295 (MQ=255)                                                                                aGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCt                                       <  4:108080/301‑1 (MQ=255)                                                                                                 cTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattt                      >  2:19654/1‑292 (MQ=255)                                                                                                       aTCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatcc                >  3:239835/1‑286 (MQ=255)                                                                                                       aTCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatcc                >  1:446784/1‑286 (MQ=255)                                                                                                             cagcagGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcac          <  4:19654/301‑22 (MQ=255)                                                                                                                     cGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcacaattccac  <  2:106165/301‑30 (MQ=255)                                                                                                                                                                                                                                                                                                            |                                                                                                                      CATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTTACCTCGTATTGTTCTTGTCAGGCATACAGGTGCGAATCAGC  >  AE015451/4236404‑4236820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑