Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	4236704	4239386	2683	17 [16]	[16] 17	[catA‑I]–catR	[catA‑I],catC,catB,catR

CATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAA  >  AE015451/4239264‑4239687                                                                                                                            |                                                                                                                                                                                                                                                                                                             ctcttccgatctagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAgg                                                                                                                             <  2:110742/288‑1 (MQ=255)          cgaagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCGGGATCATGTgc                                                                                                                    <  3:191612/297‑1 (MQ=255)             agCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGagatcggaagag                                                                                                                 >  4:110766/2‑290 (MQ=255)                       ccctgccctATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCTGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGtt                                                                                                       >  2:365728/1‑301 (MQ=255)                                            ggCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGc                                                                                  >  4:91365/1‑301 (MQ=255)                                            ggCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGc                                                                                  >  4:520500/1‑301 (MQ=255)                                                          accGGTATAGGGATGTTCCCCTTGAGCTGGTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCg                                                                    <  2:530616/299‑1 (MQ=255)                                                              gTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAAcc                                                                >  1:121720/1‑300 (MQ=255)                                                                   gggATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGctgcc                                                           >  3:49552/1‑301 (MQ=255)                                                                     taTGTTCCCATTGAGCGGTTTAATGCTGCTACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGctgcctg                                                         <  1:30771/300‑1 (MQ=255)                                                                           cccATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGcg                                                   >  4:21965/1‑300 (MQ=255)                                                                                              ctgcGACACGCGAATCGCCAGGGCTCAAGCCAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCa                                <  2:520350/301‑1 (MQ=255)                                                                                                gcGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCTGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAgc                              <  4:365818/301‑1 (MQ=255)                                                                                                              gCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGt                >  3:41051/1‑301 (MQ=255)                                                                                                                   ggCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTTGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTgtgt           >  4:400087/1‑301 (MQ=255)                                                                                                                          aaCAGTCAATCGAAAAGCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTGCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCAt    <  1:41050/300‑1 (MQ=255)                                                                                                                            cAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATaa  >  1:349233/1‑301 (MQ=255)                                                                                                                            |                                                                                                                                                                                                                                                                                                             CATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAA  >  AE015451/4239264‑4239687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑