Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5280964	5282389	1426	17 [16]	[16] 17	pcaG–pcaH	pcaG,pcaH

CCCACCGCGTGCGGGGATGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCC  >  AE015451/5280663‑5281031                                                                                                                                                                                                                                                                                                             |                                                                     cccACCGCGTGCGGGGATGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGGAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCggg                                                                      <  3:151540/301‑1 (MQ=255)  ccACCGCGTGCGGGGATGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATCTGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACCTTGCTCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGc                                                                     >  1:341694/1‑301 (MQ=255)               ggATGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCTTCGGGTTACGCAGAGCGTTGTAGGAACGGGCTTGCCCTCGactg                                                        >  2:226421/1‑298 (MQ=255)                 aTGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATggg                                                      >  1:261866/1‑301 (MQ=255)                   cttccgatctcccTGCGAGCTGACCCGGTGTTTCCGGCGCATTCTGTACATCCCGGGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGcc                                                    <  2:257235/290‑1 (MQ=255)                    gACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCg                                                   <  4:597671/301‑1 (MQ=255)                     ccccgggttccTGCGAGCTGACCCGGAGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCGCCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGGGCGGGCTTGCCCGCGAATGGGCCGc                                                  <  4:346601/292‑1 (MQ=255)                             aCCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCAACATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGGGGAGGCAGATCGATGTCGCAGCGGGCTTGCCCGCGAAGGGGccagaccggaag                                          >  4:257293/1‑291 (MQ=255)                               cTGCGAGCTGACCCTGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTCCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCAGGTCCGGCGCCGATCGTTGTATTGCCGGGGCTGCTTTTCAGCCCATTCGCGGGCAAGCCCGCACCGACATTGATCGGCCTCGGTGTACGCAGATCGTTGTAGCAGCGGGCTTGCCCGCGAATGGCCCGCAGCGCGGccc                                        >  3:121064/1‑301 (MQ=255)                                        ctcttccgatctCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCa                               <  4:58238/290‑1 (MQ=255)                                         ccccGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAc                              <  3:261865/300‑1 (MQ=255)                                          cccGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAcc                             <  1:420339/301‑1 (MQ=255)                                              gCGTGTCGAGCGCATTCTTGACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCCTCGAGCGCTGTGCATGGTTTGACCAGTTGCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGGTATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGGAGAGCGGCCCCAAGCTTCAccgcgg                         <  1:121062/301‑5 (MQ=255)                                                    cGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCCCAGAGCGGCCCCAAGATTCaaaatcggaaggg                   >  2:58221/1‑289 (MQ=255)                                                         ccgatCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAccgcggccgctcaggag              <  3:73071/297‑16 (MQ=255)                                                                gTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAccgcggccgcccaggaaggatcgg       >  1:73069/1‑279 (MQ=255)                                                                     tctcGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAccgcggccgctcaggaggttacgacctcc  <  4:48069/301‑28 (MQ=255)                                                                                                                                                                                                                                                                                                             |                                                                     CCCACCGCGTGCGGGGATGGACCCGGATACCTGCGAGCTGACCCGGCGTTTCGAGCGCATTCTGTACATCTCGTGCAACCCGGAAACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCC  >  AE015451/5280663‑5281031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑