Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5280964	5282389	1426	17 [16]	[16] 17	pcaG–pcaH	pcaG,pcaH

CCTGGGCGGGCATGCCGGTTTCCTCTCTTGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCACCGGGCAGGACC  >  AE015451/5282328‑5282690                                                               |                                                                                                                                                                                                                                                                                                             cgatgattaattgtcaacagctcagatctGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAACAGGCCGACGCAGCGACACCGTGGTCGATGCCCGGGGCGAAGGTCGCGGTGGCGGCATGCGCTTCGGCGGGGGCaa                                                                >  2:182219/29‑301 (MQ=255)                  aagctcagatctGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCgggg                                               <  4:41901/290‑1 (MQ=255)                      tcagatctGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTAACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGAt                                           >  3:180894/8‑301 (MQ=255)                            ctGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTctgct                                     >  4:457208/2‑301 (MQ=255)                             tGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTctgctg                                    >  4:173163/1‑301 (MQ=255)                             tGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTctgctg                                    >  4:147766/1‑301 (MQ=255)                                       agaACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCgcgctatcttccccgcatagaattt                          >  3:296834/1‑277 (MQ=255)                                          aCGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCTTGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGACATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCg                       >  4:689235/1‑301 (MQ=255)                                           cGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCgg                      >  1:350778/1‑301 (MQ=255)                                             ctcttccgatctaGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCggct                    <  3:622761/289‑1 (MQ=255)                                                 ccgatccacggCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCggctggct                <  2:182728/292‑1 (MQ=255)                                                     tGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCAcc            <  4:182262/301‑1 (MQ=255)                                                     gggCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCAcc            <  2:457079/300‑1 (MQ=255)                                                        cAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCggctggctagatcgg         >  4:182771/1‑294 (MQ=255)                                                         aGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCggctagatcggaagag        >  1:622759/1‑289 (MQ=255)                                                           gCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCACCGGGCAg      <  2:173121/301‑1 (MQ=255)                                                               aCTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCACCGGGCAGGAcc  >  1:476694/1‑301 (MQ=255)                                                               |                                                                                                                                                                                                                                                                                                             CCTGGGCGGGCATGCCGGTTTCCTCTCTTGGAATTGTGAGAACGCCTGGGCGTGGCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGTGATGTCTTAACACCTTTGCCTGACACCAGCCGCTTTCCTGAACTAATCTTTGTCTTCTTGTTTCACGCTCGGAGAGCATTCATGGAATGGCGAAAAGGCCGACGCAGCGACAACGTGGTCGATGCCCGGGGCGAAGGTGGCGGTGGCGGCATGCGCTTCGGCGGCGGCAAGGGGCTGGGGCTCGGGGCGATTCTGCTGATCGTCGGCATCGGCTGGCTCACCGGGCAGGACC  >  AE015451/5282328‑5282690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑