Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	4236737	4239341	2605	27 [25]	[26] 27	[catA‑I]–catR	[catA‑I],catC,catB,catR

CGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTTACCTCGTATTGTTCTTGTCAGGCATACAGGTGCGAATCAGCG  >  AE015451/4236436‑4236821                                                                                                                                                                                                                                                                                                             |                                                                                      gggCAACGGACAACGGGCGTTGGATGGGGCGCGGGGTGCAGCCGCCAAGGCCGGCTTCGGCAGCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGc                                                                                       <  2:295868/300‑1 (MQ=255) cGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGc                                                                                       <  1:552636/301‑1 (MQ=255)  ggCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCt                                                                                      <  4:21159/301‑1 (MQ=255)                  ggagttagggggggcgGGGGGCGGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGAAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAgtgt                                                                      <  2:652452/288‑1 (MQ=255)                   cTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGtgtg                                                                     <  4:419327/301‑1 (MQ=255)                        aTGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAgtgtagatcg                                                                >  4:652673/1‑295 (MQ=255)                        aTGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGaaa                                                                >  1:498235/1‑301 (MQ=255)                                 ggggTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGGGGGGGAAATTTTCCCgg                                                       >  2:308199/1‑301 (MQ=255)                                    gTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCa                                                    <  4:308280/301‑1 (MQ=255)                                          ccgccAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGc                                              <  3:498246/301‑1 (MQ=255)                                            gccAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCtg                                            >  4:864649/1‑300 (MQ=255)                                               aaGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGAcc                                         <  4:714151/301‑1 (MQ=255)                                                    cGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGtt                                    >  1:358406/1‑300 (MQ=255)                                                      tcTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTAtt                                  <  2:763400/300‑1 (MQ=255)                                                       cTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTAtta                                 >  4:763657/1‑300 (MQ=255)                                                        ttCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGt                                >  1:496365/1‑301 (MQ=255)                                                        gttcagacgtgtgctcttccgatctagGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGt                                <  4:528921/276‑1 (MQ=255)                                                           ggCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGAACTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtt                             >  1:377844/1‑298 (MQ=255)                                                             cATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaa                           <  2:441287/301‑6 (MQ=255)                                                                ccTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaatt                        >  3:519089/1‑293 (MQ=255)                                                                ccTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaatt                        >  4:719872/1‑293 (MQ=255)                                                                           tGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCAAGGTCATCGTGCTGACCTCGTTTTGtgtgaaattgttatccgctc             >  1:194800/1‑282 (MQ=255)                                                                             cagcagGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcac           >  1:236687/1‑280 (MQ=255)                                                                                 agGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTTACCTCGTATTGtagatcggaagagcggcgtgtagggg       >  2:528759/1‑276 (MQ=255)                                                                                     cGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcacaattccac   <  3:496376/301‑30 (MQ=255)                                                                                      gAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcacaattccacc  >  2:131553/1‑271 (MQ=255)                                                                                      gAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTGACCTCGTATTGtgtgaaattgttatccgctcacaattccaca  >  3:448520/1‑271 (MQ=255)                                                                                                                                                                                                                                                                                                             |                                                                                      CGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCGCCGCCAAGGCCGGCTTCGGCATCCTTGGCATCCTGCAGCAGGTCGAGGAAGTGCTCGATACCCAGGCCAGCAGCCAGCAGGCCTGCCTCGTTACGGCCGCCCAGGCGGTTGAGGTAGTCGACGGCGTGCCAGAACTCGTCCTCGGTAATCTCCAGGTCTTCGATCAGGCGGGCGGTGTCTTGCAGCACGCGCAGAATGATCTGCTTGAAGCGCGGGTTTCCTTCGGCATGGTCCAGGCCAGCTACCCGGTTGAAGAAGGCTTGAATGTCGGCAGTGTGGGAAATTTTCACGGTCATCGTGCTTACCTCGTATTGTTCTTGTCAGGCATACAGGTGCGAATCAGCG  >  AE015451/4236436‑4236821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑