Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	4236737	4239341	2605	27 [25]	[26] 27	[catA‑I]–catR	[catA‑I],catC,catB,catR

CCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCT  >  AE015451/4239250‑4239638                                                                                             |                                                                                                                                                                                                                                                                                                         acgggagtgcgccttgagcgacacgaagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCAccc                                                                                          >  1:56764/28‑300 (MQ=255)   gggagtgcgccttgagcgacacgaagCTGTATAGTCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAg                                                                                        >  2:124725/26‑301 (MQ=255)        tgcgccttgagcgacacgaagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGccc                                                                                   <  1:414598/281‑1 (MQ=255)               tgagcgacacgaagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAgg                                                                            <  4:124760/288‑1 (MQ=255)                         gaagCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTgcg                                                                  >  1:691335/4‑301 (MQ=255)                                 ataGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTCACCAGTCGCTCAACCGTGCAAACAACTCCTCTTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCCCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGTTTTCACCGAGTCCCCGCACAGGCTCATGTgccccctttcc                                                          >  2:427909/1‑292 (MQ=255)                                     ccctgccctATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCACCACTTCCCGtt                                                      >  2:340271/1‑301 (MQ=255)                                      ctctttcccttcccTATCCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTc                                                     <  2:275229/288‑1 (MQ=255)                                            ctATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCGGGATCATGTGCGCCACTTCCCGTTCGcggtc                                               >  1:417787/1‑301 (MQ=255)                                            cgaTTGGCTATGCCGGCCCCCGATACCCAGCGGTATAGGGATGTTTCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAAGCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGcggtc                                               <  2:841291/299‑1 (MQ=255)                                                   cTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTcagatcggaagagc                                        >  4:275305/1‑288 (MQ=255)                                                   cTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGc                                        >  4:239097/1‑301 (MQ=255)                                                    tATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAggc                                       >  2:521974/1‑299 (MQ=255)                                                     aTGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCAc                                      >  4:15470/1‑301 (MQ=255)                                                      gttcagacgtgttccgatctCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCAcc                                     <  3:482188/282‑1 (MQ=255)                                                        ccGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTg                                   <  4:522136/301‑1 (MQ=255)                                                          ggCCCCGTATACCCAGCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGc                                 <  2:239033/301‑1 (MQ=255)                                                              ccGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGcc                             >  4:334999/1‑301 (MQ=255)                                                                gTATACCCATCGGTATAGGGATGTTCCCATTGAGCTTTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGa                           >  3:545829/1‑301 (MQ=255)                                                                  ataCCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAg                         <  4:340359/301‑1 (MQ=255)                                                                  ataCCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAg                         >  4:353917/1‑301 (MQ=255)                                                                          cGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGCTTTCACAGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCAccagatcggaagcggggcgttg                 >  1:482177/1‑281 (MQ=255)                                                                           ggTATAGGGATGTTCCCATTGGGCTGTTTCATGCTGCGACACGCTAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAAc                <  2:353821/301‑1 (MQ=255)                                                                                   gATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGctgcctg        <  3:56765/301‑1 (MQ=255)                                                                                    aTGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGctgcctgc       >  4:185177/1‑301 (MQ=255)                                                                                         gatcttGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCt  <  1:500284/297‑1 (MQ=255)                                                                                         cccATGGAGCTGTTTCATGCTGCGAAACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCt  <  2:15469/301‑1 (MQ=255)                                                                                             |                                                                                                                                                                                                                                                                                                         CCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGGCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCT  >  AE015451/4239250‑4239638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑