Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	AE015451	5,342,745	1681 bp→GCGGCCGC		[pgi‑II]	[pgi‑II]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5342745	5344425	1681	53 [0]	[0] 53	[pgi‑II]	[pgi‑II]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5342744	0 (0.000)	52 (0.620) +GCGGCCGC	49/536	1.4	100%	intergenic (+190/‑17)	panC/pgi‑II	pantothenate synthetase/glucose‑6‑phosphate isomerase
	?	AE015451	5344426 =	0 (0.000)					intergenic (+1/‑177)	pgi‑II/acsA‑II	glucose‑6‑phosphate isomerase/acetyl‑CoA synthetase

GTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCAAGGGAACCCCGCGCAATGGCGTATTACCGTACACCCCACGATGTGACGGCCCTGCCCGCCTGGCAGGCGCTTCAGAAACACCGCGACGCCATGCAAAGCTTCAGCATGCGCGAAGCCTTCGCCGCCGATGCCAAGCGCTTCGACCAGTTTTCCCTCAGCGCTTGCGGCCTGTTCCTCGACTACTCGAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAATCTGGCCAATGAAGTGGGCCTGCAGGACGC  >  AE015451/5342453‑5343002                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                   gTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgc                                                                                                                                                                                                                                                            <  1:584856‑M1/300‑9 (MQ=255)             cGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgt                                                                                                                                                                                                                                                 <  1:155569‑M1/299‑20 (MQ=255)                     ggtggtGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctct                                                                                                                                                                                                                                       <  1:39146‑M1/301‑30 (MQ=255)                                 ggcggcTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgt                                                                                                                                                                                                                                                 <  1:24958‑M1/279‑20 (MQ=255)                                 ggcggcTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctc                                                                                                                                                                                                                                                          <  1:625899‑M1/270‑11 (MQ=255)                                 ggcggcTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctc                                                                                                                                                                                                                                                          >  2:625874‑M1/1‑260 (MQ=255)                                   cggcTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTCCCCTGTCCAAGCCCTCACCACGCACCccggccccgccgagcttgtgcccgtctcttcgccggtaaaccc                                                                                                                                                                                                                         >  2:371656‑M1/1‑258 (MQ=255)                                    ggcTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcc                                                                                                                                                                                                                                          >  1:692061‑M1/1‑257 (MQ=255)                                        tACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccg                                                                                                                                                                                                                        <  1:63785‑M1/297‑45 (MQ=255)                                        tACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgg                                                                                                                                                                                                                                 >  1:490312‑M1/1‑253 (MQ=255)                                             gggTAACACGCGGTGGTTCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctacca                                                                                                                                                                                                                 <  1:371668‑M1/299‑52 (MQ=255)                                                tAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggc                                                                                                                                                                                                              >  1:63201‑M1/1‑245 (MQ=255)                                                tAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgag                                                                                                                                                                                                                                                      <  1:139194‑M1/259‑15 (MQ=255)                                                tAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCCCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTCAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgat                                                                                                                                                                                                                                                      >  2:139191‑M1/1‑245 (MQ=255)                                                     cgcgGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTTGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacg                                                                                                                                                                                                          <  2:63199‑M1/298‑59 (MQ=255)                                                                 aCAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTTTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacct                                                                                                                                                                                                  >  2:827465‑M1/1‑228 (MQ=255)                                                                     ccTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTTTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgta                                                                                                                                                                                              >  1:383325‑M1/1‑224 (MQ=255)                                                                     ccTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcggtaccccgtaggagcgg                                                                                                                                                                                       >  2:37699‑M1/1‑224 (MQ=255)                                                                          aCCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgta                                                                                                                                                                                              <  2:383313‑M1/289‑71 (MQ=255)                                                                              gCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcct                                                                                                                                                                                                                     <  1:499866‑M1/262‑48 (MQ=255)                                                                               cATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggccccttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttaccc                                                                                                                                                                               >  1:140749‑M1/1‑214 (MQ=255)                                                                                aTTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggttt                                                                                                                                                                                   <  1:827491‑M1/294‑82 (MQ=255)                                                                                aTTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacc                                                                                                                                                                                                                          <  2:490291‑M1/255‑43 (MQ=255)                                                                                aTTTGGAAGAGAAGACCGAATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttaccc                                                                                                                                                                               <  2:315078‑M1/298‑86 (MQ=255)                                                                                    ggAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgccccgagcttgtgccggccccttcgcgggtaaacccgcctaccaggc                                                                                                                                                                                                              >  2:890029‑M1/1‑209 (MQ=255)                                                                                    ggAAGAGAAGACCGAAAAACGGTCTTGGGCTGCCTTGCAGCCCATACGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGAACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttac                                                                                                                                                                                 <  1:174901‑M1/292‑84 (MQ=255)                                                                                      aagagaagaCCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCAATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaaccagttacctcgtaggagcgggtttacccgcgaagagg                                                                                                                                                                      >  1:157503‑M1/1‑207 (MQ=255)                                                                                               ccGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgc                                                                                                                                                                                                                       >  2:17211‑M1/1‑198 (MQ=255)                                                                                                 gCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgc                                                                                                                                                                                                                                               <  2:666925‑M1/217‑22 (MQ=255)                                                                                                  cATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgccggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggcc                                                                                                                                                                    >  1:615394‑M1/1‑195 (MQ=255)                                                                                                                    ccTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctccca                                                                                                                                            <  1:37701‑M1/297‑121 (MQ=255)                                                                                                                        gCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTGTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacc                                                                                                                                                                                <  1:347218‑M1/257‑85 (MQ=255)                                                                                                                         cAGCCCATTCGCGGCCAGGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggtt                                                                                                                                                          <  1:17213‑M1/278‑107 (MQ=255)                                                                                                                               aTTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgccttacctcgtaggagccggtttacccgcgaagaagccggcccaggttgaacaccggtcccagctacactgtctt                                                                                                                               >  1:265139‑M1/1‑166 (MQ=255)                                                                                                                                       gCAAGCCCGCTCCTGCACGTTTACCTGTAGGTGCGGGCTTGCTTGCAATGCGCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTCGCCTTTGCCTATAACGGTGCCAGCCTGAACCCGGCAACGACCGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagctt                                                                                                                                                                                                                                                   <  2:371751‑M1/175‑18 (MQ=255)                                                                                                                                         aaGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggt                                                                                                                                                           <  1:890055‑M1/261‑106 (MQ=255)                                                                                                                                                       aCGTTTACCTGTAGGGACGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatc                                                                                                       <  1:770918‑M1/299‑158 (MQ=255)                                                                                                                                                         gTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggcc                                                                                                                                                                    <  2:615369‑M1/236‑97 (MQ=255)                                                                                                                                                            tACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctaccctgttctatcgaataaccgttgcagtccaacgcccct                                                                                                 >  2:36842‑M1/1‑137 (MQ=255)                                                                                                                                                                 gTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacaatgtcttatcgaatagccgttgcagtccatcgcccctt                                                                                                >  1:204031‑M1/1‑132 (MQ=255)                                                                                                                                                                         gggcTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctc                                                                                                                                                                                                 >  2:470362‑M1/1‑124 (MQ=255)                                                                                                                                                                                  tgcAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccg                                                                             <  2:140746‑M1/298‑184 (MQ=255)                                                                                                                                                                                          ccccAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgt                                                                       <  1:36844‑M1/296‑190 (MQ=255)                                                                                                                                                                                              aaaaGCCCCCTGCCATACCCCTTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgttcgatatcc                                                              <  2:44843‑M1/301‑199 (MQ=255)                                                                                                                                                                                                         gCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggccccttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggttgacccgcgaagaggccggcccaggttg                                                                                                                                                         >  2:733150‑M1/1‑92 (MQ=255)                                                                                                                                                                                                               cccATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaaca                                                                                                                                                     <  2:692036‑M1/197‑112 (MQ=255)                                                                                                                                                                                                                  aTTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttac                                                                                              >  2:180523‑M1/1‑83 (MQ=255)                                                                                                                                                                                                                             gTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggccccttcgcgggtaaacccgcctaccaggcaacgcgttacctcgcaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgt                                                                                                                                  >  2:246331‑M1/1‑72 (MQ=255)                                                                                                                                                                                                                                 ccTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgttcgatatc                                                               <  2:204026‑M1/265‑198 (MQ=255)                                                                                                                                                                                                                                                     aGCCTGAACACGGCAACGACTGCCGTGTCCAAGCCCTAACCACGAACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccat                                                                                                        <  1:470383‑M1/204‑157 (MQ=255)                                                                                                                                                                                                                                                        cTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgttcgatatccgcaaatacccccaggccctggccgtcagccagtccgccgcccccacccccga          >  1:855137‑M1/1‑45 (MQ=255)                                                                                                                                                                                                                                                            aCCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgttcgatatccgcaaatacccccaggccctggccgtcagccagtccgccgccctcacccccgaagactacc  <  1:180527‑M1/299‑259 (MQ=255)                                                                                                                                                                                                                                                                                   aaGCCCTCACCACGCACCgcggccgctccgagcttgtgccggcctcttcgcgggtaaacccgcctaccaggcaacgcgttacctcgtaggagcgggtttacccgcgaagaggccggcccaggttgaacaccgctcccagctacactgtcttatcgaatagccgttgcagtccatcgccccttacaagagcaggaccacccgccatgttcgatatccgcaaatacccccaggc                                              <  1:898724‑M1/232‑215 (MQ=255)                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                   GTGATCAATGATCGAGACCTGGTGGTGATTGCGGCGGCTTACCTGGGTAACACGCGGTTGATCGACAACCTCTACCTGCATTTGGAAGAGAAGACCGCATAACGGTCTTGGGCTGCCTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTGCACGTTTACCTGTAGGGGCGGGCTTGCTTGCAATGCCCCCAAAATCCCCCTGCCATACCCATTCCCAGCACGTGGCCTTTGCCTATAATGGTGCCAGCCTGAACCCGGCAACGACTGCCGTGTCCAAGCCCTCACCACGCACCAAGGGAACCCCGCGCAATGGCGTATTACCGTACACCCCACGATGTGACGGCCCTGCCCGCCTGGCAGGCGCTTCAGAAACACCGCGACGCCATGCAAAGCTTCAGCATGCGCGAAGCCTTCGCCGCCGATGCCAAGCGCTTCGACCAGTTTTCCCTCAGCGCTTGCGGCCTGTTCCTCGACTACTCGAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAATCTGGCCAATGAAGTGGGCCTGCAGGACGC  >  AE015451/5342453‑5343002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑