New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5696567	25 (0.240)	12 (0.120)	12/584	5.4	41.1%	intergenic (+19/‑193)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
	?	AE015451	5696629 =	10 (0.100)					intergenic (+81/‑131)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
Rejected: Coverage evenness skew score above cutoff.

TGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCAC  >  AE015451/5696268‑5696705                                                                                                                                                                                                                                                                                                              |                                                                                                                                           ggctgctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCAc                                                                                                                                           <  1:200587/300‑1 (MQ=255) ccttgcggcCACTGGCCATTGCCCTGGGGCAGGCGGGCCTGCTCGACCTGCCGACCGTGCTGGCCCGCCTGGGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCAc                                                                                                                                           <  2:390552/294‑1 (MQ=255)    tgctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGCCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCAcaga                                                                                                                                        >  4:390665/1‑298 (MQ=255)     gctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCGTGCTTAGCGGGCACGccc                                                                                                                                       <  4:528507/301‑1 (MQ=255)     gctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGccc                                                                                                                                       >  1:110812/1‑301 (MQ=255)        gcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGcc                                                                                                                                    >  3:599703/1‑300 (MQ=255)           ccTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTccc                                                                                                                                 <  3:95694/300‑1 (MQ=255)                        cTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcaccac                                                                                                                    <  3:302786/301‑1 (MQ=255)                        cTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATcaccac                                                                                                                    <  1:628850/301‑1 (MQ=255)                         tGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACcaca                                                                                                                   <  4:115871/301‑1 (MQ=255)                         gggTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACcaca                                                                                                                   <  1:154218/300‑1 (MQ=255)                               cggACGGCCTGCGCGCCCTGCCGTCCTTGCTGGCCGGCCTGCCCAGCGGCCCGGCTTCCGCCCTGCGCCTGCCGGCCGGTGAGGTGAAAGTGGGTGGCCCGGCCGCCCTGGTGCTGTTCTACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGACCTGCCCGTTCATCAGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTGAGCGGGCATGCCCGcgaatgccttcacatagtccccccg                                                                                                             <  4:807060/300‑25 (MQ=255)                                cgccgctcttccgatcttGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCGGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaa                                                                                                            <  1:206772/284‑1 (MQ=255)                                     cccggcgcGACCTGCAGACTGTGCGGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGTCCGGGGATCTGAAAGGGGGTGGCGCGGGCGACCTGGGGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAt                                                                                                       <  2:85269/294‑1 (MQ=255)                                       cTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCAtgt                                                                                                     <  1:599691/301‑1 (MQ=255)                                          ccaaccatgactcacTTGCTGGCCCACATGAACCACGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCACGGCCGACATGGTGCTGTTCGACACGCAAGCGT‑CACACGTTGCGTGACCCA‑AATGGTTCTCACTTTTCAAGCCCTTCCCCTTCCTGCTCCCCTGCCTTCCTTTCCCCTTTCTTTCTGCGTTTTTGCCTGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGt                                                                                                  <  4:430898/287‑1 (MQ=255)                                             gACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAAc                                                                                               <  3:110815/301‑1 (MQ=255)                                                 tGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCaaagatcggaagagcacac                                                                                           >  3:206779/1‑284 (MQ=255)                                                       ccTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAg                                                                                     >  3:218963/1‑301 (MQ=255)                                                                          cagcGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGc                                                                  >  1:198552/1‑301 (MQ=255)                                                                                         cgccCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTcacaagatcgga                                                   >  4:862498/1‑293 (MQ=255)                                                                                                                aGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGACCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTCCGTTATACCTTGTTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGACCACCACAATTCAAAGGCATGTGGTAACCTTGTGGGAGCGGGCATGCCCCCTAATGCCTCCACATAGACCCCACGCCACGCGCGAccctgtaccc                            >  1:59223/1‑293 (MQ=255)                                                                                                                 gCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATccc                           >  3:392691/1‑301 (MQ=255)                                                                                                                     aaaGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCCATCGCGACCactcgcacgtccc                       >  4:167647/1‑289 (MQ=255)                                                                                                                     aaaGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCACTGCCAAGCGCGAcccatcatcacccac                       >  4:388598/1‑288 (MQ=255)                                                                                                                                          cTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCgagaccggaagagcgtcgtgg  >  1:297288/1‑281 (MQ=255)                                                                                                                                                                                                                                                                                                              |                                                                                                                                           TGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAC‑CGTTGC‑TGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCAC  >  AE015451/5696268‑5696705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.