New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5696567	25 (0.240)	12 (0.120)	12/584	5.4	41.1%	intergenic (+19/‑193)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
	?	AE015451	5696629 =	10 (0.100)					intergenic (+81/‑131)	pyrC'/hslV	dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease
Rejected: Coverage evenness skew score above cutoff.

CAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCCGACGCCTTCA  >  AE015451/5696341‑5696925                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                         cagcGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGc                                                                                                                                                                                                                                                                                              >  1:198552/1‑301 (MQ=255)                cgccCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTcacaagatcgga                                                                                                                                                                                                                                                                               >  4:862498/1‑293 (MQ=255)                                       aGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGACCTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTCCGTTATACCTTGTTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGACCACCACAATTCAAAGGCATGTGGTAACCTTGTGGGAGCGGGCATGCCCCCTAATGCCTCCACATAGACCCCACGCCACGCGCGAccctgtaccc                                                                                                                                                                                                                                                        >  1:59223/1‑293 (MQ=255)                                        gCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATccc                                                                                                                                                                                                                                                       >  3:392691/1‑301 (MQ=255)                                            aaaGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCCATCGCGACCactcgcacgtccc                                                                                                                                                                                                                                                   >  4:167647/1‑289 (MQ=255)                                            aaaGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCACTGCCAAGCGCGAcccatcatcacccac                                                                                                                                                                                                                                                   >  4:388598/1‑288 (MQ=255)                                                                 cTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCgagaccggaagagcgtcgtgg                                                                                                                                                                                                                              >  1:297288/1‑281 (MQ=255)                                                                                                                                                                                                               ccaaacgtgtgctcttccaatctcccGCTCCCACAGGATCACCACAATTCCAAGCCAGGTGTAAACCCGGTGGGGCCGGCCAGGCCCGCAAATGCCTTCACATAGTCCCCCCGCCAAGCCCGACCATCCATCCCCCCC‑GTTGGAAACCCTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAgg                                                                               <  3:8950/278‑1 (MQ=255)                                                                                                                                                                                                                               gggcacgttcgcccctagacgatgaccacAATTGCCACGCATGCGGTAACCCTGTCGTAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGt                                                                <  4:250471/277‑1 (MQ=255)                                                                                                                                                                                                                                                                        tgcttccgacctatcgtaGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGATTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCg                       <  1:467711/284‑1 (MQ=255)                                                                                                                                                                                                                                                                                cccaggcgtagctggCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACt               <  3:632327/288‑1 (MQ=255)                                                                                                                                                                                                                                                                                cccTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACt               <  4:30169/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                             ggCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCCGACGCCTTCa  <  3:6746/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                             ggCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCCGACGCCTTCa  <  4:368110/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                         CAGCGGCCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCATCGGCCACTGCCTGCCGGGCGCGGTGCGTTATACCTTGGTCGATGGCCACATCTGCCACGAGGCCTGAGTACCATGCTTAGCGGGCACGCCCGCTCCCACAGGATCACCACAATTCCAAGGCATGTGGTAACCCTGTGGGAGCGGGCATGCCCGCGAATGCCTTCACATAGTCCCCCCGCCAAGCGCGACCATTCATCCCCCCCGGTTGAAATCCTTCCCCCCACCCCCATATGAGTCTGCATCAGGCACTTTCGCCCCGCTGCGTGGAGACTCTCCCCTTGACCACAATCGTTTCTGTCCGCCGTAACGGCAAAGTCGTCATGGGCGGCGACGGCCAGGTATCCCTCGGCAACACCGTGATGAAAGGCAACGCCAAGAAGGTGCGCCGCCTGTACCACGGCCAGGTCATCGCGGGCTTCGCCGGCGCCACTGCCGACGCCTTCA  >  AE015451/5696341‑5696925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.