New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 228274825 (0.290)13 (0.150) 13/540 7.7 34.9% intergenic (‑140/+89) PP_2010/PP_2011 Cytochrome b561/conserved exported protein of unknown function
?AE015451 2282815 = 24 (0.280)intergenic (‑207/+22) PP_2010/PP_2011 Cytochrome b561/conserved exported protein of unknown function
Rejected: Coverage evenness skew score above cutoff.

AGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGTGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2282528‑2282748
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGCCCTCGGCCATCACCCAGTCCCGCCGACGAAGCCAGCGCCCCCGC  >  AE015451/2282815‑2283107
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
AGCGGCCAGCAGCACCAGCATCGGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGTGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCC                                                                                                                                                                                                                                                                                                          <  1:593166/218‑1
               CAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGTGGGGGGGGATGAAACCATGATTGGTCCTCGCCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAG                                                                                                                                                                                                                 >  1:367731/1‑292
                                                   GTAATGGGTGGTGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGC                                                                                                                                                                                               >  2:259585/1‑274
                                                               GGGGGGGGATGAAACCATGATTGGTCCTCGCCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAG                                                                                                                                                                                                                 <  2:367719/244‑1
                                                                     GGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGC                                                                                                                                                                                               <  1:259591/256‑1
                                                                                                                                                                              GTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGC                                                                           <  1:428883/267‑1
                                                                                                                                                                              GTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGC                                                                           >  2:428863/1‑267
                                                                                                                                                                                      TGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCAACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGCCCTCGGCCAT                                    >  1:256017/1‑298
                                                                                                                                                                                            GCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGC                                              >  1:944461/1‑282
                                                                                                                                                                                            GCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGC                                              <  2:944435/282‑1
                                                                                                                                                                                                   ACCGGCCTCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGC                                                                 >  1:467953/1‑256
                                                                                                                                                                                                          TCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTG                                                                  >  1:724902/1‑248
                                                                                                                                                                                                          TCTTCGCTGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTG                                                                  <  2:724876/248‑1
                                                                                                                                                                                                                 TGGCACGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGCCCTCGGCCATCACCCAGTCCCGCCGACGAAGCCAGCGCCC      >  1:679649/1‑301
                                                                                                                                                                                                                          CGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGCCCTCGGCCATCACCCAGTCCCGCCGACGAAGCCAGCGCCCCCGC  >  2:213020/1‑296
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
AGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGTGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2282528‑2282748
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCAGCGGTTGCCAACGCTCGCCCTCGGCCATCACCCAGTCCCGCCGACGAAGCCAGCGCCCCCGC  >  AE015451/2282815‑2283107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.