New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2282748	25 (0.290)	13 (0.150)	13/540	7.7	34.9%	intergenic (‑140/+89)	PP_2010/PP_2011	Cytochrome b561/conserved exported protein of unknown function
	?	AE015451	2282815 =	24 (0.280)					intergenic (‑207/+22)	PP_2010/PP_2011	Cytochrome b561/conserved exported protein of unknown function
Rejected: Coverage evenness skew score above cutoff.

TTCATCAGGTTGCGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCA  >  AE015451/2282463‑2283045                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                                          ttCATCAGGTTGCGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAAc                                                                                                                                                                                                                                                                                             >  2:70535/1‑300 (MQ=255)  tcataaGGTGGCGTTCGGAGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCAAGCAGCACCAGAATCAGCCAATGCAGGGCGATGGACAGGGGGGCGTAAGGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACt                                                                                                                                                                                                                                                                                            <  1:70537/300‑1 (MQ=255)      caGGTTGCGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTcc                                                                                                                                                                                                                                                                                                        >  1:722991/1‑284 (MQ=255)             cGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCACCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCtt                                                                                                                                                                                                                                                                                  <  1:119110/299‑1 (MQ=255)             cGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCACCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCtt                                                                                                                                                                                                                                                                                  >  2:119108/1‑299 (MQ=255)                       tGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACt                                                                                                                                                                                                                                                                                            >  1:230188/1‑279 (MQ=255)                                ggAACAGGCCACGCAGTTAGATGAGTGCATAGAGAGCGGCCAGCGGCACCAGCATCAGCCAATGCAGGGCGATGGGCAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTgg                                                                                                                                                                                                                                                                <  1:593097/298‑1 (MQ=255)                                               gTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGTGGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgt                                                                                                                                                                                                                                                           >  1:838579/1‑289 (MQ=255)                                                  cGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt                                                                                                                                                                                                                                                                  >  1:268911/1‑278 (MQ=255)                                                                                        aGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACt                                                                                                                                                                                                                                                                                            <  2:230183/214‑1 (MQ=255)                                                                                            aaTGCAGGGCGATGGACAGGCGGGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTcc                                                                                                                                                                                                                                                                                                        <  2:722965/198‑1 (MQ=255)                                                                                                 aGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCCGGCGACATCAGTTACCGGGCAGATAGGGcc                                                                                                                                                                                            >  1:211808/1‑301 (MQ=255)                                                                                                                   gcgTAATGGGTGGG‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt                                                                                                                                                                                                                                                                  <  2:268905/213‑1 (MQ=255)                                                                                                                    cgTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTAc                                                                                                                                                                                                           <  1:26484/267‑1 (MQ=255)                                                                                                                     gTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCt                                                                                                                                                                                                                                                                                   <  1:813608/194‑1 (MQ=255)                                                                                                                                                 cATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCCACCACCAGAAACACCCGTTCTGCCTCCTGCCCGGCAcc                                                                                                                                              >  1:426523/1‑300 (MQ=255)                                                                                                                                                                                              gcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTAc                                                                                                                      <  1:230209/279‑1 (MQ=255)                                                                                                                                                                                                   ggAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCa                                                                                                                                                                                                                          >  2:443519/1‑174 (MQ=255)                                                                                                                                                                                                   ggAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCa                                                                                                                                                                                                                          <  1:443539/174‑1 (MQ=255)                                                                                                                                                                                                                        ggAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACACACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGAACAAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGcc                                                                             >  1:411113/1‑294 (MQ=255)                                                                                                                                                                                                                                          cAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGcc                                                     >  1:184570/1‑300 (MQ=255)                                                                                                                                                                                                                                                tgtgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGCCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCCCCGCCTGCCAGCACTc                                              >  2:550045/1‑301 (MQ=255)                                                                                                                                                                                                                                                    aaaaaTGTGTTGCCAGCCCCCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTGGGAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCt                                          <  2:838553/301‑1 (MQ=255)                                                                                                                                                                                                                                                        aTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACCTCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGAc                                       >  1:433511/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                            ccGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGGGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCa  <  2:184566/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                                          TTCATCAGGTTGCGTTCGGCGCTGTCCTTGGGGAACAGGCCACGCAGTTCGATGAGTGCATAGACAGCGGCCAGCAGCACCAGCATCAGCCAATGCAGGGCGATGGACAGGCGCGCGTAATGGGTGGT‑GGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGCACATGCAGCCAGGCTGCAAACTGCTCCGCCTGCCAGCACTCACCTGACTCCACCCTTGCCGGCGCCAGCCAGGCATGCCGCTGCA  >  AE015451/2282463‑2283045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.